Long-read data analysis workshop. Raw and pre-processed data

Datasets generated for the tutorials of the Long-read Data Analysis Workshop held at UNSW (Sydney, Australia) on 27-28 September 2018.

This Long-read Data Analysis Workshop was a two-day workshop held on 27-28 September 2018 at the University of New South Wales.

The workshop aimed to introduce attendees to genome assembly using long-read data. PacBio, Oxford Nanopore and Chromium 10x approaches were covered within the workshop. Participants were given hands-on experience of using data QC and assembly tools for both PacBio and Oxford Nanopore data.

The contents of this repository correspond to the raw and pre-processed data required to follow the tutorials.

Day 1:

• Tutorial: Day_1_practicals_LRDW.html or Day_1_practicals_LRDW.pdf (printer-friendly)
• Klebsiella_pneumoniae_25727.tar.gz (main dataset)
• Staphylococcus_aureus_25745.tar.gz
• Staphylococcus_aureus_25747.tar.gz

Day 2:

• Tutorial: Day_2_practicals_LRDW.pdf
• nanopore_practicals.tar.gz

To extract the contents on your command line simply run this on your command line:

tar xvzf filename.tar.gz

Additional contents of the workshop are located in their respective repositories:

• Combined presentations:
  https://f1000research.com/slides/7-1595
• Individual presentations available at:
  https://bitbucket.org/xvazquezc/longread2018