Published December 2, 2024 | Version v1
Dataset Open

Data repository for the 2022 AAPM deep-learning spectral CT grand challenge

Creators

Contributors

Project leader:

  • 1. ROR icon American Association of Physicists in Medicine

Description

This repository contains all the materials necessary for training deep-learning based algorithms
for the DL-spectral CT Challenge.
The training data folder contains 1000 cases with which to train your networks.
For more information about the spectral CT modeling, please see starting_kit.tgz.

 

 

Data are in python numpy's .npy format, and arrays are stored in float32 (single precision).
The .npy files can be read into python with the numpy.load command, yielding single precision
floating point arrays of the proper dimensions.

Files:
Phantom_[Tissue].npy.gz   ([Tissue] can be Adipose, Fibroglandular, or Calcification)
These arrays are 1000x512x512. Files are gzipped for faster data transfer.
1000 images of pixel dimensions 512x512.
These are ground truth Tissue maps for the simulated breast phantom.

[low/high]kVpTransmission.npy.gz
These arrays are 1000x256x1024
The represent 1000 cases of the low and high kVp transmission data, each of which has 256 projections
onto a linear 1024-pixel detector.

[low/high]kVpImages.npy.gz
These arrays are 1000x512x512
1000 images of pixel dimensions 512x512, generated from [low/high]kVpTransmission.npy
by standard negative logarithm processing followed by filtered back-projection (FBP)
image reconstruction.

For the challenge, the goal will be to estimate (or predict) Phantom_[Tissue].npy
from either [low/high]kVpTransmission.npy or [low/high]kVpImages.npy or both.

Iterative or model-based approaches will necessarily use [low/high]kVpTransmission.npy as input.
Deep-learning approaches can be:
solely image-to-image; i.e. [low/high]kVpImages -> Phantom[Tissue] prediction.
solely data-to-image; i.e. [low/high]kVpTransmission -> Phantom[Tissue] prediction.
Or some combination of the two.
Hybrid iterative/deep-learning approaches are also acceptable.

 

Participants using image-to-image approaches do not need to know the spectral CT model.
All other approaches will need this knowledge and model specifications are
provided in the folder, which has been packed in the gzipped tar-file starting_kit.tgz.

 

Challenge report is published in Medical Phyiscs:

Sidky EY, Pan X. Report on the AAPM deep-learning spectral CT Grand Challenge. Med Phys. 2024; 51: 772785.

See link below in Related Works.

 

Files

Files (3.5 GB)

Name Size Download all
md5:f600ba6546c0f8fab3b227e3d470c5ed
716.2 MB Download
md5:57011ed1b0346d1062627a6ba86f6b7e
842.5 MB Download
md5:8afab98fef99400d4f293f57281fa6a3
717.4 MB Download
md5:8c48d814d3db4c34f1cb96348cd1c9d9
850.8 MB Download
md5:1d0c7239fa747a285c7ef1bcf684e3da
102.2 MB Download
md5:2e04dc154dc36087a2404007c1b36baa
6.9 MB Download
md5:746641e2910c231a39441d242bdfd458
113.8 MB Download
md5:7aaf6b55708a6576ebfa91e43ec80082
102.7 MB Download

Additional details

Related works

Is supplement to
Journal article: 10.1002/mp.16363 (DOI)

Funding

Advanced iterative image reconstruction for digital breast tomosynthesis - Resubmission 01 1R01EB026282-01A1
National Institutes of Health
Spectral CT metal artifact correction 1R01EB023968-01A1
National Institutes of Health
Algorithm-Enabled Auto-Calibrating Quantitative Dual-Energy CT 1R21CA263660-01A1
National Institutes of Health