Published November 15, 2024 | Version v1
Dataset Open

DATASET: TESTING NICHE EQUIVALENCE IN AMPHIDROMOUS FISH POPULATIONS

  • 1. ROR icon Universidad Católica de la Santísima Concepción
  • 2. Universidad Austral de Chile

Description

Presence records of Galaxias maculatus were collected from 12 locations across five river basins in central-southern Chile during March, May, August, and November of 2019 as part of a study on fish sampling and processing (Ramírez-Álvarez et al. 2022. doi.org/10.1038/s41598-022-06936-8)

Isotopic niches defined using a standard ellipse area (SEAc) in isotopic space, represented by a 2D ellipsoidal space (δ13C - δ15N) (see Supporting Information: Standard ellipse area functions - Ramírez-Álvarez et al. 2024. doi:10.1007/s10750-024-05738-5) - Empirical Bayesian Kriging

Database of varibles used for niche modelling: isotopic niche and seven abiotic variables selected from 23 predictor variables: (1) 19 climate variables representing 1950–2000 climate averages from WorldClim (http://www.worldclim.org/). (2) Four spatially continuous topographic and hydrological variables from the EarthEnv Project adjusted to the HydroSHEDS river network (http://www.earthenv.org/) (Domisch et al. 2015). Selection of variables was accomplished by analysis of covariance and multicollinearity, using the ENMeval R package (Muscarella et al. 2014): (1) principal component analysis (PCA) to explore relationships among all predictors, evaluating the composition of components (component variables) that accounted for ≥65% of variance explained, (2) pairwise comparisons  to detect pairs of variables with strong correlations (Pearson correlation coefficients <0.8), groups with a correlation of less than 0.8 were considered independent, and (3) variance inflation factor (VIF) <10, to reduce the effect of collinearity between predictors (Listed below). A VIF greater than 10 indicates collinearity problems in the model. The vifcor and vifstep functions were employed by calculating two different strategies to exclude highly collinear variables using a stepwise procedure (Muscarella et al. 2014).

Variable description and ecological question associated, selected variables are marked in bold.
Series 1: Temperature, temperature variations and interaction with precipitation.
bio1: Annual Mean Temperature; Is the temperature usually suitable? 
bio2: Mean Diurnal Range; Are the days too warm or too cold?
bio3: Isothermality; Do temperatures fluctuate greatly over the course of a month? 
bio4: Temperature Seasonality (standard deviation); Do temperatures fluctuate greatly over the course of a year?
bio5: Min Temperature of Coldest Month; Is the maximum temperature too high?
bio6: Min Temperature of Coldest Month; Is the temperature constantly too high?
bio7: Temperature Annual Range; Do temperatures fluctuate greatly over the course of a year?
bio8: Mean Temperature of Wettest Quarter; Is it too cold or too warm during the rainy season?
bio9: Mean Temperature of Driest Quarter; Is it too cold or too warm during the dry season?
bio10: Mean Temperature of Warmest Quarter; Are the warmer months too cold?
bio11: Mean Temperature of Coldest Quarter; Are the colder months too warm?
Series 2: Precipitation and Rainfall Patterns
bio12: Annual Precipitation; Does it rain enough in a year?
bio13: Precipitation of Wettest Month; Does it rain a lot during the wettest month?
bio14: Precipitation of Driest Month; Does it rain poorly during the driest month?
bio15: Precipitation Seasonality (Coefficient of Variation); Would rainfall fluctuate much between seasons?
bio16: Precipitation of Wettest Quarter; Does it rain a lot in the rainy season?
bio17: Precipitation of Driest Quarter; Is rainfall low during dry seasons?
bio18: Precipitation of Warmest Quarter; Does it rain enough during the warmer months?
bio19: Precipitation of Coldest Quarter; Does it rain enough during the colder months?
Series 3: Topology and hydrology
dem: Average elevation; Does altitude play a role as a topological factor?
slope_av: Average slope; Is the slope suitable for the accumulation of small ponds?
flow_ac_ac: Accumulation flow; Does enough water accumulate or does it drain too quickly?
flow_ac_le: Accumulation flow direction; Does the flow direction support the formation of small ponds?

Domisch, S., G. Amatulli & W. Jetz, 2015. Near-global freshwater-specific environmental variables for biodiversity analyses in 1 km resolution. Scientific Data 2(1):150073 doi:10.1038/sdata.2015.73.

Muscarella, R., P. J. Galante, M. Soley‐Guardia, R. A. Boria, J. M. Kass, M. Uriarte & R. P. Anderson, 2014. ENM eval: An R package for conducting spatially independent evaluations and estimating optimal model complexity for Maxent ecological niche models. Methods in ecology and evolution 5(11):1198-1205

Files

bio11-Mean Temperature of Coldest Quarter.tif

Files (2.5 MB)

Name Size Download all
md5:ab4941eef8ba89f54bbb4fd6c4e17359
526.6 kB Preview Download
md5:bcf6cac0b1013d4016f115b8b0df8c25
264.4 kB Preview Download
md5:91f593df54759fdd02391d1f2b039f92
264.4 kB Preview Download
md5:c384c1c923600a8f5e0cec43fffe24f0
264.4 kB Preview Download
md5:3944a0f1d282af5c63d154478e5be6d5
133.4 kB Preview Download
md5:f3c7eca3e498a381fc0fc73d6760c47e
38.1 kB Download
md5:59a2c97ae9a2b7e5807754bcc78d03e7
264.4 kB Preview Download
md5:6565ed8b72be84352f5d72efef302c24
526.6 kB Preview Download
md5:dd57738c2a84905234b2576e6b683ce2
264.5 kB Preview Download

Additional details

Funding

Agencia Nacional de Investigación y Desarrollo
Fondecyt 1230617