Published November 12, 2024 | Version v1
Dataset Open

Characterization of tumour heterogeneity through segmentation-free representation learning on multiplexed imaging data

Creators

  • 1. ROR icon New York University

Description

This is the data repository for Characterization of tumour heterogeneity through segmentation-free representation learning on multiplexed imaging data.

Catalog:

  1. Intermediate data used in plotting: CANVAS_source_data.zip
    1. Single cell monocyte data: monocyte.h5ad
    2. qPCR table: qPCR_1013.csv
    3. NanoString GeoMx cell composition: fig6b.csv
  2. Pretrained CANVAS model: checkpoint-1999.pth

The source IMC data is avaiable at: https://zenodo.org/records/7760826

Files

CANVAS_source_data.zip

Files (4.8 GB)

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md5:29e2b4b0c868db118858d4c88c54e2a3
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