Published November 4, 2024
| Version v1
Journal
Open
Unveiling Nucleosome Dynamics: A Comparative Study Using All-Atom and Coarse-Grained Simulations Enhanced by Principal Component Analysis
Creators
-
1.
City University of New York
-
2.
College of Staten Island
-
3.
The Graduate Center, CUNY
Description
backmap_rep1_1kx5.pdb - Backmapped trajectory of SIRAH CG trajectory of Replica 1, ASP Sequence
backmap_traj_1kx5.pdb - BAckmapped trajectory of SIRAH CG trajectory of Replica 2, ASP Sequence
replica3_1kx5_backmap.pdb - Backmapped trajectory of SIRAH CG trajectory of Replica 3, ASP Sequence
backmap_lz0_6us.pdb - Backmapped trajectory of SIRAH CG trajectory of Replica 1, Widom601 Sequence
1lz0_backmap_traj.pdb - Backmapped trajectory of SIRAH CG trajectory of Replica 2, Widom601 Sequence
full_traj_lz0_backmap.pdb - Backmapped trajectory of SIRAH CG trajectory of Replica 3, Widom601 Sequence
dry_1kx5_015M_6us.xtc - Atomistic trajectory using Anton2, ASP sequence.
wt_3lz0_015_6us.xtc - Atomistic trajectory using Anton2, Widom601 sequence.
Files
Files
(21.1 GB)
| Name | Size | Download all |
|---|---|---|
|
md5:c3d7e31cb8bb316f7b49f47e01f53f1b
|
5.8 GB | Download |
|
md5:ff084274c646eecbe64a75d911c9a581
|
2.3 GB | Download |
|
md5:2ed2c65b3aae2bc78dade2e3b0f8cd1b
|
2.4 GB | Download |
|
md5:266c83ef334675b8e4a1d37b34f3a485
|
2.4 GB | Download |
|
md5:dc7eb10823ae51fd0f20a5bd5e5d9c2a
|
2.1 GB | Download |
|
md5:68b601ca3017d083686d441ef8cf89b4
|
1.6 GB | Download |
|
md5:55984a5427d0d8f8be4310fda53d72d0
|
1.9 GB | Download |
|
md5:829e0540110142543edfb45146343462
|
2.5 GB | Download |
Additional details
Software
- Repository URL
- https://github.com/CUNY-CSI-Loverde-Laboratory/GhoshMoulick_2024-
- Programming language
- Fortran, Python
- Development Status
- Active