Published October 28, 2024 | Version v2
Dataset Open

PanTheraDB

Description

This database contains the predictions of synergy scores between triplets of more than 100 drugs treating the cell-lines from the NCI60.

Columns:

NSC1: The NSC of the first drug found in the triplet
NSC2: The NSC of the second drug found in the triplet
NSC3: The NSC of the third drug found in the triplet
CELL_NAME: The name of the treated cell-line
Bliss: The synergy score (ComboScore_{1 /to 3} defined by MEAN(PREDICTED - EXPECTED_BLISS) using the best performing model. Where EXPECTED_BLISS uses the multiplicative survival principle based on the individual dose-responses against each drug in the triplet and MEAN represents the average over the different combinations of concentrations.
Multi: The synergy score (ComboScore_{2 /to 3} defined by MEAN(PREDICTED - EXPECTED_MULTI) using the best performing model. Where EXPECTED_MULTI is defined as the minimum over the three possible pair-single drug combinations in the triplet, using the multiplicative survival principle.
{synergy}_q{XX}: Quantile XX for the synergy aggregated over an ensemble containing 10 models

Files

TreatDB.csv

Files (2.2 GB)

Name Size Download all
md5:b0b1198d0df839cd70fdda968e0ae619
2.2 GB Preview Download

Additional details

Software

Repository URL
https://github.com/alonsocampana/treatnet
Programming language
Python