Predicting gut microbial behavior in human diseases via community metabolic modeling and machine learning

Technical info

Table S1: Community exchange reactions simulated for pairwise metabolic models. 

Table S2: Growth rates for pairwise and solo models. 

Table S3: Microbial bacteria in COVID-19 patients and healthy samples. 

Table S4: Media conditions for a list of exchange reactions to quantify the growth rate prediction.

Figure S1: Unsupervised clustering of community exchange reactions The 30 community exchange reactions for 7162 pairwise metabolic models, where pairwise metabolic models were clustered for COVID-19 and healthy samples.