Published November 5, 2025
| Version v4.3.3
Software
Open
Biolink Model: A universal schema for knowledge graphs in clinical, biomedical, and translational science
Creators
- Unni, Deepak R.
- Moxon, Sierra A. T.
- Bada, Michael
- Brush, Matthew
- Bruskiewich, Richard
- Caufield, J. Harry
- Clemons, Paul A.
- Dancik, Vlado
- Dumontier, Michel
- Fecho, Karamarie
- Glusman, Gustavo
- Hadlock, Jennifer J.
- Harris, Nomi L.
- Joshi, Arpita
- Putman, Tim
- Qin, Guangrong
- Ramsey, Stephen A.
- Shefchek, Kent A.
- Solbrig, Harold
- Soman, Karthik
- Thessen, Anne E.
- Haendel, Melissa A.
- Bizon, Chris
- Mungall, Christopher J.
- Acevedo, Liliana
- Ahalt, Stanley C.
- Alden, John
- Alkanaq, Ahmed
- Amin, Nada
- Avila, Ricardo
- Balhoff, Jim
- Baranzini, Sergio E.
- Baumgartner, Andrew
- Baumgartner, William
- Belhu, Basazin
- Brandes, MacKenzie
- Brandon, Namdi
- Burtt, Noel
- Byrd, William
- Callaghan, Jackson
- Cano, Marco Alvarado
- Carrell, Steven
- Celebi, Remzi
- Champion, James
- Chen, Zhehuan
- Chen, Mei‐Jan
- Chung, Lawrence
- Cohen, Kevin
- Conlin, Tom
- Corkill, Dan
- Costanzo, Maria
- Cox, Steven
- Crouse, Andrew
- Crowder, Camerron
- Crumbley, Mary E.
- Dai, Cheng
- Dančík, Vlado
- De Miranda Azevedo, Ricardo
- Deutsch, Eric
- Dougherty, Jennifer
- Duby, Marc P.
- Duvvuri, Venkata
- Edwards, Stephen
- Emonet, Vincent
- Fehrmann, Nathaniel
- Flannick, Jason
- Foksinska, Aleksandra M.
- Gardner, Vicki
- Gatica, Edgar
- Glen, Amy
- Goel, Prateek
- Gormley, Joseph
- Greyber, Alon
- Haaland, Perry
- Hanspers, Kristina
- He, Kaiwen
- He, Kaiwen
- Henrickson, Jeff
- Hinderer, Eugene W.
- Hoatlin, Maureen
- Hoffman, Andrew
- Huang, Sui
- Huang, Conrad
- Hubal, Robert
- Huellas‐Bruskiewicz, Kenneth
- Huls, Forest B.
- Hunter, Lawrence
- Hyde, Greg
- Issabekova, Tursynay
- Jarrell, Matthew
- Jenkins, Lindsay
- Johs, Adam
- Kang, Jimin
- Kanwar, Richa
- Kebede, Yaphet
- Kim, Keum Joo
- Kluge, Alexandria
- Knowles, Michael
- Koesterer, Ryan
- Korn, Daniel
- Koslicki, David
- Krishnamurthy, Ashok
- Kvarfordt, Lindsey
- Lee, Jay
- Leigh, Margaret
- Lin, Jason
- Liu, Zheng
- Liu, Shaopeng
- Ma, Chunyu
- Magis, Andrew
- Mamidi, Tarun
- Mandal, Meisha
- Mantilla, Michelle
- Massung, Jeffrey
- Mauldin, Denise
- McClelland, Jason
- McMurry, Julie
- Mease, Philip
- Mendoza, Luis
- Mersmann, Marian
- Mesbah, Abrar
- Might, Matthew
- Morton, Kenny
- Muller, Sandrine
- Muluka, Arun Teja
- Osborne, John
- Owen, Phil
- Patton, Michael
- Peden, David B.
- Peene, R. Carter
- Persaud, Bria
- Pfaff, Emily
- Pico, Alexander
- Pollard, Elizabeth
- Price, Guthrie
- Raj, Shruti
- Reilly, Jason
- Riutta, Anders
- Roach, Jared
- Roper, Ryan T.
- Rosenblatt, Greg
- Rubin, Irit
- Rucka, Sienna
- Rudavsky‐Brody, Nathaniel
- Sakaguchi, Rayn
- Santos, Eugene
- Schaper, Kevin
- Schmitt, Charles P.
- Schurman, Shepherd
- Scott, Erik
- Seitanakis, Sarah
- Sharma, Priya
- Shmulevich, Ilya
- Shrestha, Manil
- Shrivastava, Shalki
- Sinha, Meghamala
- Smith, Brett
- Southall, Noel
- Southern, Nicholas
- Stillwell, Lisa
- Strasser, Michael " Michi"
- Su, Andrew I.
- Ta, Casey
- Thessen, Anne E.
- Tinglin, Jillian
- Tonstad, Lucas
- Tran‐Nguyen, Thi
- Tropsha, Alexander
- Vaidya, Gaurav
- Veenhuis, Luke
- Viola, Adam
- Grotthuss, Marcin
- Wang, Max
- Wang, Patrick
- Watkins, Paul B.
- Weber, Rosina
- Wei, Qi
- Weng, Chunhua
- Whitlock, Jordan
- Williams, Mark D.
- Williams, Andrew
- Womack, Finn
- Wood, Erica
- Wu, Chunlei
- Xin, Jiwen Kevin
- Xu, Hao
- Xu, Colleen
- Yakaboski, Chase
- Yao, Yao
- Yi, Hong
- Yilmaz, Arif
- Zheng, Marissa
- Zhou, Xinghua
- Zhou, Eric
- Zhu, Qian
- Zisk, Tom
Description
What's Changed
- Added one slightly broader mixin (gene or gene product or gene family) plus an additional set of Association definitions to support extra broad stroke biological relationships for the Panther ingest (from gene classifications parsed in by automat-panther) by @RichardBruskiewich in https://github.com/biolink/biolink-model/pull/1610
- Added missing biolink association "biological process or activity to gene or gene product or gene family association" by @RichardBruskiewich in https://github.com/biolink/biolink-model/pull/1611
- add chemical affects biological entity association and refactor chemi… by @sierra-moxon in https://github.com/biolink/biolink-model/pull/1614
- Clincial trials 1 2 by @sierra-moxon in https://github.com/biolink/biolink-model/pull/1615
- Slots for automat by @sierra-moxon in https://github.com/biolink/biolink-model/pull/1616
- Update attributes.yaml by @mbrush in https://github.com/biolink/biolink-model/pull/1617
- Add mutant_form tform or variant enum by @mbrush in https://github.com/biolink/biolink-model/pull/1620
- deprecate 'assesses' / 'was tested for effect on' by @mbrush in https://github.com/biolink/biolink-model/pull/1622
- Curies version bump by @sierra-moxon in https://github.com/biolink/biolink-model/pull/1626
- Fixing issues with
affects_response_topredicates by @mbrush in https://github.com/biolink/biolink-model/pull/1625 - Added ICEES related Study Result class and slots, with some rearrangement in definition ordering for readability by @RichardBruskiewich in https://github.com/biolink/biolink-model/pull/1629
- V4.3.3 by @sierra-moxon in https://github.com/biolink/biolink-model/pull/1630
Full Changelog: https://github.com/biolink/biolink-model/compare/v4.3.2...v4.3.3
Notes
Files
biolink/biolink-model-v4.3.3.zip
Files
(3.5 MB)
| Name | Size | Download all |
|---|---|---|
|
md5:198abf3ae3aa25c2ddb56291c7832b87
|
3.5 MB | Preview Download |
Additional details
Related works
- Is supplement to
- Software: https://github.com/biolink/biolink-model/tree/v4.3.3 (URL)
Software
- Repository URL
- https://github.com/biolink/biolink-model