Published October 13, 2022 | Version v1
Journal article Restricted

Undescribed Diversity in a Widespread, Common Group of Asian Mud Snakes (Serpentes: Homalopsidae: Hypsiscopus)

Description

Bernstein, Justin M., Voris, Harold K., Stuart, Bryan L., Phimmachak, Somphouthone, Seateun, Sengvilay, Sivongxay, Niane, Neang, Thy, Karns, Daryl R., Andrews, Heather L., Osterhage, Jennifer, Phipps, Elizabeth A., Ruane, Sara (2022): Undescribed Diversity in a Widespread, Common Group of Asian Mud Snakes (Serpentes: Homalopsidae: Hypsiscopus). Ichthyology & Herpetology 110 (3): 560-574, DOI: 10.1643/h2022015, URL: http://dx.doi.org/10.1643/h2022015

Files

Restricted

The record is publicly accessible, but files are restricted to users with access.

Linked records

Additional details

Identifiers

LSID
urn:lsid:plazi.org:pub:9C05F11550190F674A64FFC7FF8FFFF9

References

  • Alfaro, M. E., D. R. Karns, H. K. Voris, C. D. Brock, and B. L. Stuart. 2008. Phylogeny, evolutionary history, and biogeography of Oriental-Australian rear-fanged water snakes (Colubroidea: Homalopsidae) inferred from mitochondrial and nuclear DNA sequences. Molecular Phylogenetics and Evolution 46:576-593.
  • Bain, R. H., and M. M. Hurley. 2011. A biogeographic synthesis of the amphibians and reptiles of Indochina. Bulletin of the American Museum of Natural History 2011: 1-138.
  • Bernstein, J. M., J. C. Murphy, H. K. Voris, R. M. Brown, and S. Ruane. 2021. Phylogenetics of mud snakes (Squamata: Serpentes: Homalopsidae): a paradox of both undescribed diversity and taxonomic inflation. Molecular Phylogenetics and Evolution 160:107109.
  • Bickford, D., D. J. Lohman, N. S. Sodhi, P. G. Ng, R. Meier, K. Winker, K. K. Ingram, and I. Das. 2007. Cryptic species as a window on diversity and conservation. Trends in Ecology & Evolution 22:148-155.
  • Brooks, S. E., E. H. Allison, J. A. Gill, and J. D. Reynolds. 2009. Reproductive and trophic ecology of an assemblage of aquatic and semi-aquatic snakes in Tonle Sap, Cambodia. Copeia 2009:7-20.
  • de Bruyn, M., B. Stelbrink, R. J. Morley, R. Hall, G. R. Carvalho, C. H. Cannon, G. van den Bergh, E. Meijaard, I. Metcalfe, L. Boitani, L. Maiorano, R. Shoup, and T. von Rintelen. 2014. Borneo and Indochina are major evolutionary hotspots for Southeast Asian biodiversity. Systematic Biology 63:879-901.
  • Burbrink, F. T., and M. Gehara. 2018. The biogeography of deep time phylogenetic reticulation. Systematic Biology 67:743-755.
  • Carbonnel, J. P. 1965. Essai d'interpretation morphotectonique de la cuvette Cambodgienne. Revue de Geographie Phisique et de Geologie Dynamique 7:277-281.
  • Chan, K. O., and L. L. Grismer. 2022. GroupStruct: an R package for allometric size correction. Zootaxa 5124:471- 482.
  • Cox, M. J. 1991. Snakes of Thailand and Their Husbandry. Krieger Publishing Company, Malabar, Florida.
  • Das, I. 2018. A Naturalist's Guide to the Snakes of Southeast Asia. Second edition. John Beaufoy Publishing, Oxford, UK.
  • Deuve, J. 1970. Serpents du Laos. O.R.S.T.O.M., Paris.
  • Dowling, H. G. 1951. A proposed standard system of counting ventrals in snakes. British Journal of Herpetology 1:97-99.
  • Edwards, S. V., S. Potter, C. J. Schmitt, J. G. Bragg, and C. Moritz. 2016. Reticulation, divergence, and the phylogeography-phylogenetics continuum. Proceedings of the National Academy of Sciences of the United States of America 113:8025-8032.
  • Geissler, P., T. Hartmann, F. Ihlow, D. Rodder, N. A. Poyarkov Jr., T. Q. Nguyen, T. Ziegler, and W. Bohme. 2015. The Lower Mekong: an insurmountable barrier to amphibians in southern Indochina? Biological Journal of the Linnean Society 114:905-914.
  • Gressitt, J. L. 1941. Amphibians and reptiles from southeastern China. Philippine Journal of Science 75:1-58.
  • Guindon, S., J.-F. Dufayard, V. Lefort, M. Anisimova, W. Hordijk, and O. Gascuel. 2010. New algorithms and
  • Gyi, K. K. 1970. A revision of colubrid snakes of the subfamily Homalopsinae. University of Kansas Publications, Museum of Natural History 20:47-223.
  • Hall, R. 2009. Southeast Asia's changing palaeogeography. Blumea-Biodiversity, Evolution and Biogeography of Plants 54:148-161.
  • Hartmann, T., P. Geissler, N. A. Poyarkov Jr., F. Ihlow, E. A. Galoyan, D. Rodder, and W. Bohme. 2013. A new species of the genus Calotes Cuvier, 1817 (Squamata: Agamidae) from southern Vietnam. Zootaxa 3599:246-260.
  • Heibl, C. 2008. PHYLOCH: R language tree plotting tools and interfaces to diverse phylogenetic software packages. http://www.christophheibl.de/Rpackages.html
  • Hoang, D. T., O. Chernomor, A. von Haeseler, B. Q. Minh, and L. S. Vinh. 2018. UFBoot2: improving the ultrafast bootstrap approximation. Molecular Biology and Evolution 35:518-522.
  • Husson, L., F. C. Boucher, A.-C. Sarr, P. Sepulchre, and S. Y. Cahyarini. 2020. Evidence of Sundaland's subsidence requires revisiting its biogeography. Journal of Biogeography 47:843-853.
  • Hutchison, C. S. 1989. Geological Evolution of South-east Asia. Second edition. Claredon Press, Oxford, UK.
  • Jayne, B. C., H. K. Voris, and P. K. L. Ng. 2018. How big is too big? Using crustacean-eating snakes (Homalopsidae) to test how anatomy and behaviour affect prey size and feeding performance. Biological Journal of the Linnean Society 123:636-650.
  • Kalyaanamoorthy, S., B. Q. Minh, T. K. F. Wong, A. von Haeseler, and L. S. Jermiin. 2017. ModelFinder: fast model selection for accurate phylogenetic estimates. Nature Methods 14:587-589.
  • Karns, D. R., V. Lukoschek, J. Osterhage, J. C. Murphy, and H. K. Voris. 2010. Phylogeny and biogeography of the Enhydris clade (Serpentes: Homalopsidae). Zootaxa 2452: 18.
  • Karns, D. R., J. C. Murphy, H. K. Voris, and J. S. Suddeth. 2005. Comparison of semi-aquatic snake communities associated with the Khorat Basin, Thailand. Tropical Natural History 5:73-90.
  • Karsen, S. J. 1986. Hong Kong Amphibians and Reptiles. Urban Council, Hong Kong.
  • Klabacka, R. L., P. L. Wood, J. A. McGuire, J. R. Oaks, L. L. Grismer, J. L. Grismer, A. Aowphol, and J. W. Sites. 2020. Rivers of Indochina as potential drivers of lineage diversification in the spotted flying lizard (Draco maculatus) species complex. Molecular Phylogenetics and Evolution 150:106861.
  • Kohler, G., K. P. P. Khaing, N. L. Than, D. Baranski, T. Schell, C. Greve, A. Janke, and S. U. Pauls. 2021. A new genus and species of mud snake from Myanmar (Reptilia, Squamata, Homalopsidae). Zootaxa 4915:301-325.
  • de Lang, R. 2017. The Snakes of Java, Bali and Surrounding Islands. Edition Chimaira, Frankfurt am Main.
  • de Lang, R., and G. Vogel. 2005. Snakes of Sulawesi: A Field Guide to the Land Snakes of Sulawesi with Identification Keys. Edition Chimaira/Serpents Tale NHBD, Frankfurt am Main.
  • Le, D. T. T., T. G. Tran, H. D. Hoang, and B. L. Stuart. 2021. A new species of Pareas (Squamata, Pareidae) from southern Vietnam. Vertebrate Zoology 71:439-451.
  • Lee, J. L. 2021. Description of a new species of Southeast Asian reed snake from northern Laos (Squamata: Colubridae: genus Calamaria F. Boie, 1827) with a revised diagnosis of Calamaria yunnanensis Chernov, 1962. Journal of Natural History 55:531-560.
  • Li, J. N., C. He, P. Guo, P. Zhang, and D. Liang. 2017. A workflow of massive identification and application of intron markers using snakes as a model. Ecology and Evolution 7:10042-10055.
  • Lukoschek, V., J. L. Osterhage, D. R. Karns, J. C. Murphy, and H. K. Voris. 2011. Phylogeography of the Mekong mud snake (Enhydris subtaeniata): the biogeographic importance of dynamic river drainages and fluctuating sea levels for semiaquatic taxa in Indochina. Ecology and Evolution 1:330-342.
  • Meijaard, E., and C. P. Groves. 2006. The geography of mammals and rivers in mainland Southeast Asia, p. 305- 329. In: Primate Biogeography: Progress and Prospects. S. M. Lehman and J. G. Fleagle (eds.). Springer US, Boston, Massachusetts.
  • Mell, R. 1922. Beitrage zur Fauna Sinica. i. Die Vertebraten Sudchinas; Feldlisten und Feldnoten der Sauger, Vogel, Reptilien, Batrachier. Archiv fur Naturgeschichte 88:1- 134.
  • Miller, A. H., H. R. Davis, A. M. Luong, Q. H. Do, C. T. Pham, T. Ziegler, J. L. Lee, K. de Queiroz, R. G. Reynolds, and T. Q. Nguyen. 2020. Discovery of a new species of enigmatic odd-scaled snake (Serpentes: Xenodermidae: Achalinus) from Ha Giang Province, Vietnam. Copeia 108:796-808.
  • Minh, B. Q., M. A. T. Nguyen, and A. von Haeseler. 2013. Ultrafast approximation for phylogenetic bootstrap. Molecular Biology and Evolution 30:1188-1195.
  • Murphy, J. C. 2007. Homalopsid Snakes: Evolution in the Mud. Krieger Publishing Company, Malabar, Florida.
  • Murphy, J. C., and H. K. Voris. 2014. A checklist and key to the homalopsid snakes (Reptilia, Squamata, Serpentes), with the description of new genera. Fieldiana Life and Earth Sciences 2014:1-43.
  • Murphy, J. C., and H. K. Voris. 2020. A new species of Brachyorrhos from Seram, Indonesia and notes on fangless homalopsids (Squamata, Serpentes). Philippine Journal of Systematic Biology 14:pjsb2020b14015.
  • Nguyen, L.-T., H. A. Schmidt, A. von Haeseler, and B. Q. Minh. 2015. IQ-TREE: a fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies. Molecular Biology and Evolution 32:268-274.
  • Oksanen, J., F. G. Blanchet, M. Friendly, R. Kindt, P. Legendre, D. McGlinn, P. R. Minchin, R. B. O'Hara, G. L. Simpson, P. Solymos, M. H. H. Stevens, E. Szoecs, and H. Wagner. 2020. vegan: community ecology package. https://CRAN.R-project.org/package¼vegan
  • Padgham, M., M. D. Sumner, and C. F. F. Karney (original author of included code for geodesic distances). 2021. geodist: fast, dependency-free geodesic distance calculations. https://CRAN.R-project.org/package¼geodist
  • Paradis, E., and K. Schliep. 2019. ape 5.0: an environment for modern phylogenetics and evolutionary analyses in R. Bioinformatics 35:526-528.