Published July 21, 2017
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A new species of Colletotrichum from Sonchus sp. in Italy
Creators
- 1. Centre of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai 57100, Thailand & Institute of Plant and Environment Protection, Beijing Academy of Agriculture and Forestry Sciences, Beijing 100097, People's Republic of China
- 2. A.M.B. Gruppo Micologico Forlivese ''Antonio Cicognani'', Via Roma 18, Forlì, Italy & A.M.B. Circolo Micologico ''Giovanni Carini'', C.P. 314, Brescia, Italy & Societa` per gli Studi Naturalistici della Romagna, C.P. 144, Bagnacavallo, RA, Italy
- 3. Institute of Plant and Environment Protection, Beijing Academy of Agriculture and Forestry Sciences, Beijing 100097, People's Republic of China
- 4. Centre of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai 57100, Thailand
Description
Jayawardena, Ruvishika S., Camporesi, Erio, Elgorban, Abdallah M., Bahkali, Ali H., Yan, Jiye, Hyde, Kevin D. (2017): A new species of Colletotrichum from Sonchus sp. in Italy. Phytotaxa 314 (1): 55-63, DOI: 10.11646/phytotaxa.314.1.3, URL: http://dx.doi.org/10.11646/phytotaxa.314.1.3
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Identifiers
- LSID
- urn:lsid:plazi.org:pub:4E3AFFECFFDEFFDB5A77FFFDFFE3F95A
References
- Buyck, B., Duhem, B., Das, K., Jayawardena, R.S., Niveiro, N., Pereira, O. L., Prasher, I.B., Adhikari, S., Alberto, E. O., Bulgakov, T.S., Castaneda-Ruiz R.F., Hembrom, M.E., Hyde, K.D., Lewis, D.P., Michlig, A., Nuytinck, J., Parihar, A., Popoff, O.F., Ramirez, N.A., Silva, M.D., Verma, R.K. & Hofstetter, V. (2017) Fungal Diversity Profiles 21-30. Cryptogamie Mycologie 38: 101-146. https://doi.org/10.7872/crym/v38.iss1.2017.101
- Cai, L., Hyde, K.D., Taylor, P.W.J., Weir, B.S., Waller, J., Abang, M.M., Zhang, J.Z., Yang, Y.L., Phoulivong, S., Liu, Z.Y., Prihastuti, H., Shivas, R.G., McKenzie, E.H.C. & Johnston, P.R. (2009) A polyphasic approach for studying Colletotrichum. Fungal Diversity 39: 183-204.
- Cannon, P.F., Damm, U., Johnston, P.R. & Weir, B.S. (2012) Colletotrichum-current status and future directions. Studies in Mycology 73: 181-213. https://doi.org/10.3114/sim0014
- Carbone, I. & Kohn, L.M. (1999) A method for designing primer sets for speciation studies in filamentous ascomycetes. Mycologia 91: 553-556. https://doi.org/10.2307/3761358
- Chomnunti, P., Hongsanan, S., Aguirre-Hudson, B., Tian, Q., Persoh, D., Dhami, M.K., Alias, A.S., Xu, J.-C., Liu, X.-Z., Stadler, M. & Hyde, K.D. (2014) The sooty moulds. Fungal Diversity 66: 1-36. https://doi.org/10.1007/s13225-014-0278-5
- Corda, A.C.I. (1831) Die Pilze Deutschlands. In: Sturm, J. (Ed.) Deutschlands Flora in Abbildungen nach der Natur mit Beschreibungen. Sturm, Nurnberg vol. 3. Abt. 12, 33-64, tab. 21-32.
- Damm, U., Mostert, L., Crous, P.W. & Fourie, P.H. (2008) Novel Phaeoacremonium species associated with necrotic wood of Prunus trees. Persoonia 20: 87-102. https://doi.org/10.3767/003158508X324227
- Damm, U., Woudenberg, J.H.C., Cannon, P.F. & Crous, P.W. (2009) Colletotrichum species with curved conidia from herbaceous hosts. Fungal Diversity 39: 45-87.
- Damm, U., Cannon, P.F., Woudenberg, J.H.C., Johnston, P.R., Weir, B.S., Tan, Y.P., Shivas, R.G. & Crous, P.W. (2012a) The Colletotrichum boninense species complex. Studies in Mycology 73: 1-36. https://doi.org/10.3114/sim0002
- Damm, U., Cannon, P.F., Woudenberg, J.H.C. & Crous, P.W. (2012b) The Colletotrichum acutatum species complex. Studies in Mycology 73: 37-113. https://doi.org/10.3114/sim0010
- Damm, U., Cannon, P.F., Liu, F., Barreto, R.W., Guatimosim, E. & Crous, P.W. (2013) The Colletotrichum orbiculare species complex: important pathogens of field and weeds. Fungal Diversity 61: 29-59. https://doi.org/10.1007/s13225-013-0255-4
- Damm, U., O'Connell, R.J., Groenewald, J.Z. & Crous, P.W. (2014) The Colletotrichum destructivum species complex-hemibiotrophic pathogens of forages and field crops. Studies in Mycology 79: 49-84. https://doi.org/10.1016/j.simyco.2014.09.003
- Hall, T.A. (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symposium Series 41: 95-98.
- Hillis, D.M. & Bull, J.J. (1993) An empirical test of bootstrapping as a method for assessing confidence in phylogenetic analysis. Systematic Biology 42: 182. https://doi.org/10.1093/sysbio/42.2.182
- Huson, D.H. (1998) Splits Tree: analyzing and visualizing evolutionary data. Bioinformatics 14: 68-73. https://doi.org/10.1093/bioinformatics/14.1.68
- Huson, D.H. & Bryant, D. (2006) Application of phylogenetic networks in evolutionary studies. Molecular Biology and Evolution 23: 254-267. https://doi.org/10.1093/molbev/msj030
- Hyde, K.D., Cai, L., McKenzie, E.H.C., Yang, Y.L., Zhang, J.Z. & Prihastuti, H. (2009a) Colletotrichum: a catalogue of confusion. Fungal Diversity 39: 1-17.
- Hyde, K.D., Cai, L., Cannon, P.F., Crouch, J.A., Crous, P.W., Damm, U., Goodwin, P.H., Chen, H., Johnston, P.R., Jones, E.B.G., Liu, Z.Y., McKenzie, E.H.C., Moriwaki, J., Noireung, P., Pennycook, S.R., Pfenning, L.H., Prihastuti, H., Sato, T., Shivas, R.G., Tan, Y.P., Taylor, P.W.J., Weir, B.S., Yang, Y.L. & Zhang, J.Z. (2009b) Colletotrichum names in current use. Fungal Diversity 39: 147-182.
- Goonasekara, I.D., Gorczak, M., Hahn, M., Jayawardena, R.S., van Kan, J.A.L., Laurence, M.H., Levesque, C.A., Li, X.H., Liu, J.K., Maharachchikumbura, S.S.N., Manamgoda, D.S., Martin, F.N., McKenzie, E.H.C., McTaggart, A.R., Mortimer, P.E., Nair, P.V.R., Pawlowska, J., Rintoul, T.L., Shivas, R.G., Spies, C.F.J., Summerell, B.A., Taylor, P.W.J., Terhem, R.B., Udayanga, D., Vaghefi, N., Walther, G., Wilk, M., Wrzosek, M., Xu, J.C., Yan, J.Y. & Zhou, N. (2014) One stop shop: backbones trees for important phytopathogenic genera: I. Fungal Diversity 67: 21-125. https://doi.org/10.1007/s13225-014-0298-1
- Index Fungorum (2017) Available from: http://www.indexfungorum.org/names/names.asp (accessed 1 July 2017)
- Jayasiri, S.C., Hyde, K.D., Abd-Elsalam, K.A., Abdel-Wahab, M.A., Ariyawansa, H.A., Bhat, J., Buyck, B., Dai, Y.C., Ertz, D., Hidayat, I., Jeewon, R., Jones, E.B.G., Karunarathna, S.C., Kirk, P., Lei, C., Liu, J.K., Maharachchikumbura, S.S.N., McKenzie, E., Ghobad- Nejhad, M., Nilsson, H., Pang, K.L., Phookamsak, R., Rollins, A.W., Romero, A.I., Stephenson, S., Suetrong, S., Tsui, C.K.M., Vizzini, A., Wen, T.C., De Silva, N.I., Promputtha, I. & Kang, J.C. (2015) The faces of fungi database: fungal names linked with morphology, molecular and human attributes. Fungal Diversity 74: 18-357. https://doi.org/10.1007/s13225-015-0351-8
- Jayawardena, R.S., Hyde, K.D., Jeewon, R., Li, X.H., Liu, M. & Yan, J.Y. (2016a) Mycosphere Essay 6: Why it is important to correctly name Colletotrichum species? Mycosphere 7: 1076-1092.
- Jayawardena, R.S., Li, X.H., Liu, M., Zhang, W. & Yan, J.Y. (2016b) Mycosphere Essay 16: Colletotrichum: Biological control, biocatalyst, secondary metabolites and toxins. Mycosphere 7: 1164-1176.
- Jayawardena, R.S., Hyde, K.D., Damm, U., Cai, L., Liu, M., Li, X.H., Zhang, W., Zhao, W.S. & Yan, J.Y. (2016c) Notes on currently accepted species of Colletotrichum. Mycosphere 7: 1192-1260.
- Katoh, K. & Toh, H. (2008) Recent developments in the MAFFT multiple sequence alignment program. Briefings in Bioinformatics 9: 276-285. https://doi.org/10.1093/bib/bbn013
- Kishino, H. & Hasegawa, M. (1989) Evaluation of the maximum likelihood estimate of the evolutionary tree topologies from DNA sequence data. Journal of Molecular Evolution 29: 170-179. https://doi.org/10.1007/BF02100115
- Liu, F., Weir, B.S., Damm, U., Crous, P.W., Wang, Y., Liu, B., Wang, M., Zhang, M. & Cai, L. (2015) Unravelling Colletotrichum species associated with Camellia: employing ApMat and GS loci to resolve species in the C. gloeosporioides complex. Persoonia 35: 63-86. https://doi.org/10.3767/003158515X687597
- Liu, F., Wang, M., Damm, U., Crous, P.W. & Cai, L. (2016) Species boundaries in plant pathogenic fungi: a Colletotrichum case study. BMC Evolutionary Biology 16: 81. https://doi.org/10.1186/s12862-016-0649-5
- Maharachchikumbura, S.S.N., Hyde, K.D., Jones, E.B.G., McKenzie, E.H.C., Huang, S-K., Abdel-Wahab, M.A., Daranagama, D.A., Dayarathne, M., D'souza, M.J., Goonasekara, I.D., Hongsanan, S., Jayawardena, R.S., Kirk, P.M., Konta, S., Liu, J-K., Liu, Z-Y., Norphanphoun, C., Shenoy, B.D., Xiao, Y., Bahkali, A.H., Kang, J., Somrothipol, S., Suetrong, S., Wen, T. & Xu, J. (2015) Towards a natural classification and backbone tree for Sordariomycetes. Fungal Diversity 72: 199-301. https://doi.org/10.1007/s13225-015-0331-z
- Maharachchikumbura, S.N., Hyde, K.D., Jones, E.B.G., McKenzie, E.H.C., Bhat, J.D., Dayarathne, M.C., Huang, S.K., Norphanphoun, C., Senanayake, I.C., Perera, R.H., Shang, Q.J., Xiao, Y., D'souza, M.J., Hongsanan, S., Jayawardena, R.S., Daranagama, D.A., Konta, S., Goonasekara, I.D., Zhuang, W.Y., Jeewon, R., Phillips, A.J.L., Abdel-Wahab, M.A., Al-Sadi, A.M., Bahkali, A.H., Boonmee, S., Boonyuen, N., Cheewangkoon, R., Dissanayake, A.J., Kang, J., Li, Q.R., Liu, J.K., Liu, X.Z., Liu, Z.Y., Luangsa-ard, J.J., Pang, K.L., Phookamsak, R., Promputtha, I., Suetrong, S., Stadler, M., Wen, T. & Wijayawardene, N.N. (2016) Families of Sordariomycetes. Fungal Diversity 79: 1-317. https://doi.org/10.1007/s13225-016-0369-6
- Nylander, J.A.A. (2004) MrModeltest 2.0. Program distributed by author. Evolutionary Biology Centre, Uppsala University.
- O'Donnell, K. & Cigelnik, E. (1997) Two divergent intragenomic rDNA ITS2 types within a monophyletic lineage of the fungus Fusarium are nonorthologous. Molecular Phylogeny and Evolution 7: 103-116. https://doi.org/10.1006/mpev.1996.0376
- Philippe, H. & Bryant, D. (2006) A simple and robust statistical test for detecting the presence of recombination. Genetics 172: 2665- 2681.
- Phoulivong, S., Cai, L., Chen, H., McKenzie, E.H.C.,Abdelsalam, K., Chukeatirote, E.& Hyde, K.D. (2010) Colletotrichum gloeosporioides is not a common pathogen on tropical fruits. Fungal Diversity 44: 33-43. https://doi.org/10.1007/s13225-010-0046-0
- Quaedvlieg, W., Binder, M., Groenewald, J.Z., Summerell, B.A., Carnegie, A.J., Burgess, T.I. & Crous, P.W. (2014) Introducing the consolidated species concept to resolve species in the Teratosphaeriaceae. Persoonia 33: 1-40. https://doi.org/10.3767/003158514X681981
- Ronquist, F. & Huelsenbeck, J.P. (2003) MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19: 1572. https://doi.org/10.1093/bioinformatics/btg180
- Sanderson, M.J., Donoghue, M.J., Piel, W. & Eriksson, T. (1994) TreeBase: a prototype database of phylogenetic analyses and an interactive tool for browsing the phylogeny of life. The Journal of the Botany American 81: 6.
- Swofford, D.L. (2002) PAUP* 4.0: phylogenetic analysis using parsimony (* and other methods). Sinauer Associates, Sunderland.
- Tao, G., Liu, Z.Y., Liu, F., Gao, Y.H. & Cai, L. (2013) Endophytic Colletotrichum species from Bletilla ochracea (Orchidaceae), with description of seven new species. Fungal Diversity 61: 139-164. https://doi.org/10.1007/s13225-013-0254-5
- Templeton, M.D., Rikkerink, E.H.A., Solon, S.L. & Crowhurst, R.N. (1992) Cloning and molecular characterization of the glyceraldehyde- 3-phosphate dehydrogenase encoding gene and cDNA from the plant pathogenic fungus Glomerella cingulata. Gene 122: 225- 230. https://doi.org/10.1016/0378-1119(92)90055-T
- Than, P.P., Jeewon, R., Hyde, K.D., Pongsupasamit, S., Mongkolporn, O. & Taylor, P.W.J. (2008) Characterization and pathogenicity of Colletotrichum species associated with anthracnose on chilli (Capsicum spp.) in Thailand. Plant Pathology 57: 562-572. https://doi.org/10.1111/j.1365-3059.2007.01782.x
- Thompson, J.D., Gibson, T.J., Plewniak, F., Jeanmougin, F. & Higgins, D.G. (1997) The Clustal X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Research 24: 4876-4882. https://doi.org/10.1093/nar/25.24.4876
- Weir, B.S., Damm, U. & Johnston, P.R. (2012) The Colletotrichum gloeosporioides species complex. Studies in Mycology 73: 115-180. https://doi.org/10.3114/sim0011
- White, T.J., Bruns, T., Lee, S. & Taylor, J.W. (1990) Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis, M.A., Gelfand, D.H., Sninsky, J.J. & White, T.J. (Eds.) PCR protocols: a guide to methods and applications. Academic, New York, pp. 315-322. https://doi.org/10.1016/b978-0-12-372180-8.50042-1
- Wikee, S., Cai, L., Pairin, N., McKenzie, E.H.C., Su, Y.Y., Chukeatirote, E., Thi, H.N., Bahkali, A.H., Moslem, M.A., Abdelsalam, K. & Hyde, K.D. (2011) Colletotrichum species from Jasmine (Jasminum sambac). Fungal Diversity 46: 171-182. https://doi.org/10.1007/s13225-010-0049-x
- Yang, Y.L., Liu, Z.Y., Cai, L., Hyde, K.D., Yu, Z.N. & McKenzie, E.H.C. (2009) Colletotrichum anthracnose of Amaryllidaceae. Fungal Diversity 39: 123-146.