Biodiversity Literature Repository

Submit to community
Liberated Data
Published February 4, 2016 | Version v1
Journal article Restricted

Molecular phylogenetic analysis of Sciadophycus stellatus (Rhodymeniales, Rhodophyta) supports its placement in the family Rhodymeniaceae

Authors/Creators

  • 1. Division of Mathematics, Science, and Engineering, Hartnell College, 411 Central Ave., Salinas, California 93901, USA

Description

Hughey, Jeffery R., Miller, Kathy Ann (2016): Molecular phylogenetic analysis of Sciadophycus stellatus (Rhodymeniales, Rhodophyta) supports its placement in the family Rhodymeniaceae. Phytotaxa 245 (4): 297-300, DOI: 10.11646/phytotaxa.245.4.7, URL: http://dx.doi.org/10.11646/phytotaxa.245.4.7

Files

Restricted

The record is publicly accessible, but files are restricted to users with access.

Linked records

Additional details

Identifiers

LSID
urn:lsid:plazi.org:pub:FFC21F1AFF9F5C6CFF887C575E163922

Cites
Publication: 10.1093/nar/gkn180 (DOI)
Publication: 10.1111/j.1529-8817.1981.tb00855.x (DOI)
Publication: 10.1515/botm.1994.37.3.193 (DOI)
Publication: 10.1126/science.1065889 (DOI)
Publication: 10.1139/b2012-102 (DOI)
Publication: 10.1111/j.1529-8817.2008.00599.x (DOI)
Publication: 10.2216/10-38.1 (DOI)
Publication: 10.3897/phytokeys.52.5009 (DOI)
Publication: 10.2216/i0031-8884-40-2-168.1 (DOI)
Publication: 10.1093/bioinformatics/btg180 (DOI)
Publication: 10.2216/i0031-8884-38-1-23.1 (DOI)
Publication: 10.1080/10635150802429642 (DOI)
Has part
Figure: 10.5281/zenodo.13679931 (DOI)
Figure: 10.5281/zenodo.13679933 (DOI)

References

  • Abbott, I.A. & Hollenberg, G.J. (1976) Marine algae of California. Stanford University Press, Stanford, California, 827 pp.
  • Aguilar-Rosas, R., Aguilar-Rosas, L.E., Avila, G., Gonzalez, O. & Beanill, F. (2010) Macroalgas submareales de la Bahia de Todos Santos, Baja California, Mexico. Revista Mexicana de Biodiversidad 81: 601-618.
  • Dawson, E.Y. (1945) Some new and unreported sublittoral algae from Cerros Island, Mexico. Bulletin of the Southern California Academy of Sciences 43: 102-112.
  • Dawson, E.Y. (1963) Marine red algae of Pacific Mexico. Part 6. Rhodymeniales. Nova Hedwigia 5: 437-476.
  • Dereeper, A., Guignon, V., Blanc, G., Audic, S., Buffet, S., Chevenet, F., Dufayard, J.F., Guindon, S., Lefort, V., Lescot, M., Claverie, J.M. & Gascuel, O. (2008) Phylogeny. fr: robust phylogenetic analysis for the non-specialist. Nucleic Acids Research 36: W465-469. http://dx.doi.org/10.1093/nar/gkn180
  • Eiseman, N.J. & Moe, R.L. (1981) Maripelta atlantica sp. nov. (Rhodophyta, Rhodymeniales) a new deep-water alga from Florida. Journal of Phycology 17:299-308. http://dx.doi.org/10.1111/j.1529-8817.1981.tb00855.x
  • Giardine, B., Riemer, C., Hardison, R.C., Burhans, R., Elnitski, L., Shah, P., Zhang, Y., Blankenberg, D., Albert, I., Taylor, J., Miller, W., Kent, W.J. & Nekrutenko, A. (2005) Galaxy: a platform for interactive large-scale genome analysis. Genome Research 15: 1451-1455.
  • Goecks, J., Nekrutenko, A., Taylor, J. & The Galaxy Team. (2010) Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences. Genome Biology 11: R86.
  • Hommersand, M.H., Fredericq, S. & Freshwater, D.W. (1994) Phylogenetic systematics and biogeography of the Gigartinaceae (Gigartinales, Rhodophyta) based on sequence analysis of rbc L. Botanica Marina 37: 193-203. http://dx.doi.org/10.1515/botm.1994.37.3.193
  • Huelsenbeck, J.P., Ronquist, F., Nielsen, R. & Bollback, J.P. (2001) Bayesian inference of phylogeny and its impact on evolutionary biology. Science 294: 2310-2314. http://dx.doi.org/10.1126/science.1065889
  • Hughey, J.R. & Gabrielson, P.G. (2012) Comment on "Acquiring DNA sequence data from dried archival red algae (Florideophyceae) for the purpose of applying available names to contemporary genetic species: a critical assessment". Botany 90: 191-203. http://dx.doi.org/10.1139/b2012-102
  • Le Gall, L, Dalen, J.L. & Saunders, G.W. (2008) Phylogenetic analyses of the red algal order Rhodymeniales supports recognition of the Hymenocladiaceae fam. nov., Fryeellaceae fam. nov., and Neogastroclonium gen. nov. Journal of Phycology 44: 1556-1571. http://dx.doi.org/10.1111/j.1529-8817.2008.00599.x
  • Lindstrom, S.C., Hughey, J.R. & Martone, P.T. (2011) New, resurrected and redefined species of Mastocarpus (Phyllophoraceae, Rhodophyta) from the northeast Pacific. Phycologia 50: 661-683. http://dx.doi.org/10.2216/10-38.1
  • Lindstrom, S.C., Hughey, J.R. & Aguilar-Rosas, L.E. (2015) Four new species of Pyropia (Bangiales, Rhodophyta) from the west coast of North America: the Pyropia lanceolata species complex updated. Phytokeys 52: 1-22. http://dx.doi.org/10.3897/phytokeys.52.5009
  • Millar, A.J.K. (2001) The genus Sciadophycus (Rhodymeniaceae, Rhodophyta) from the Indo-Pacific (Research Note). Phycologia 40: 168-171. http://dx.doi.org/10.2216/i0031-8884-40-2-168.1
  • Ronquist, F. & Huelsenbeck, J.P. (2003) MRBAYES 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19: 1572- 1574. http://dx.doi.org/10.1093/bioinformatics/btg180
  • Saunders, G.W., Strachan, I.M. & Kraft, G.T. (1999) The families of the order Rhodymeniales (Rhodophyta): a molecular-systematic investigation with a description of Faucheaceae fam. nov. Phycologia 38: 23-40. http://dx.doi.org/10.2216/i0031-8884-38-1-23.1
  • Stamatakis, A., Hoover, P. & Rougemont, J. (2008) A Rapid Bootstrap Algorithm for the RAxML Web-Servers. Systematic Biology 75: 758-771. http://dx.doi.org/10.1080/10635150802429642
  • Taylor, W.R. (1945) Pacific marine algae of the Allan Hancock Expeditions to the Galapagos Islands. Allan Hancock Pacific Expeditions 12: 1-528.