Biodiversity Literature Repository

Submit to community
Liberated Data
Published September 21, 2016 | Version v1
Journal article Restricted

Allium urusakiorum (Amaryllidaceae), a new member of the Balkan clade of the section Oreiprason from European Turkey

Authors/Creators

  • 1. Department of Pharmaceutical Botany, Faculty of Pharmacy, Istanbul University, 34116 Beyazit, Istanbul, Turkey;

Description

Koçyiğit, Mine, Seregin, Alexey P., Özhatay, Neriman, Friesen, Nikolai (2016): Allium urusakiorum (Amaryllidaceae), a new member of the Balkan clade of the section Oreiprason from European Turkey. Phytotaxa 275 (3): 228-242, DOI: 10.11646/phytotaxa.275.3.2, URL: http://dx.doi.org/10.11646/phytotaxa.275.3.2

Files

Restricted

The record is publicly accessible, but files are restricted to users with access.

Linked records

Additional details

Identifiers

LSID
urn:lsid:plazi.org:pub:FF9DFF8FFFE0FF887C336E6AFFBBEF7E
URL
http://publication.plazi.org/id/FF9DFF8FFFE0FF887C336E6AFFBBEF7E

Cites
Publication: 10.2307/2408678 (DOI)
Publication: 10.11646/phytotaxa.173.2.4 (DOI)
Publication: 10.11646/phytotaxa.221.1.1 (DOI)
Publication: 10.1016/j.bse.2010.05.005 (DOI)
Publication: 10.1002/fedr.201200019 (DOI)
Publication: 10.1016/j.ympev.2015.11.004 (DOI)
Publication: 10.1007/s10265-013-0617-8 (DOI)
Publication: 10.1038/hdy.1968.76 (DOI)
Publication: 10.1038/hdy.1987.103 (DOI)
Publication: 10.1111/j.1601-5223.1935.tb03192.x (DOI)
Publication: 10.1111/j.1601-5223.1964.tb01953.x (DOI)
Publication: 10.3732/ajb.1300053 (DOI)
Publication: 10.5962/bhl.title.10533 (DOI)
Publication: 10.3906/bot-1104-22 (DOI)
Publication: 10.3897/CompCytogen.v7i1.4431 (DOI)
Publication: 10.1080/11263504.2016.1149123 (DOI)
Publication: 10.1093/bioinformatics/14.9.817 (DOI)
Publication: 10.5962/bhl.title.537 (DOI)
Publication: 10.1093/bioinformatics/btg180 (DOI)
Publication: 10.1006/bojl.1997.0109 (DOI)
Publication: 10.11646/phytotaxa.161.1.5 (DOI)
Publication: 10.12705/646.11 (DOI)
Publication: 10.11646/phytotaxa.42.1.2 (DOI)
Publication: 10.13140/2.1.3932.7526 (DOI)
Publication: 10.1111/boj.12269 (DOI)
Publication: 10.3732/ajb.94.3.275 (DOI)
Publication: 10.1093/sysbio/49.2.369 (DOI)
Publication: 10.1007/BF00037152 (DOI)
Publication: 10.1093/molbev/mst197 (DOI)
Publication: 10.1093/nar/25.24.4876 (DOI)
Publication: 10.3732/ajb.1200641 (DOI)
Publication: 10.1007/s00606-011-0528-x (DOI)
Has part
Taxonomic treatment: http://treatment.plazi.org/id/03A487F7FFE7FF817CBB6B1EFA34E97D (URL)
Figure: 10.5281/zenodo.13646586 (DOI)
Figure: 10.5281/zenodo.13646588 (DOI)
Figure: 10.5281/zenodo.13646590 (DOI)
Figure: 10.5281/zenodo.13646594 (DOI)
Figure: 10.5281/zenodo.13646596 (DOI)
Figure: 10.5281/zenodo.13646598 (DOI)

References

  • Adamovic, L. (1908) Flora Serbiae austro-orientalis. Rad Jugoslavenske Akademije Znanosti i Umjetnosti 175, Matematicko-Prirodoslovni Razred 44: 153-214.
  • Agapova, N.D., Arkharova, K.B., Vakhtina, L.I., Zemskova, E.A. & Tarvis, L.V. (1990) Numeri chromosomatum magnoliophytorum florae URSS: Aceraceae-Menyanthaceae. Nauka-Sectio Leninopolitana, St Petersburg, 507 pp.
  • Assyov, B., Petrova, A., Dimitrov, D. & Vassilev, R. (2012) Conspectus of the Bulgarian vascular flora. Distribution maps and floristic elements. 4th ed. BBF, Sofia, 490 pp.
  • Bedalov, M. & Lovric, A.Z. (1978) Biosistematska analiza taksona Allium horvatii Lovric i srodnih taksona u Istocnojadranskom Primorju. Proceedings of Eastern Alpine and Dinaric Society for Vegetation Ecology 14: 115-127.
  • Blattner, F. (1999) Direct amplification of the entire ITS region from poorly preserved plant material using recombinant PCR.Biotechniques 27: 1180-1186.
  • Cheshmedzhiev, I. (1973) Citotaksonomichno izsledvane na nyakolko korenishhni vidove luk ot Bulgarskata flora. Nauchni Trudove, Ser. Rasteniev., Vissh Selskostopanski Institut Plovdiv 22: 49-55.
  • Draghia, L., Chelariu, E.L., Sirbu, C., Branza, M. & Sandu Miculschi, C. (2013) Analysis of chromosome number in some Allium and Silene wild species with ornamental use. Notulae Botanicae Horti Agrobotanici Cluj-Napoca 41: 294-300.
  • Felsenstein, J. (1985) Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39: 783-791. http://dx.doi.org/10.2307/2408678
  • Friesen, N., Fritsch, R.M. & Blattner, F.R. (2006) Phylogeny and new intrageneric classification of Allium (Alliaceae) based on nuclear ribosomal DNA ITS sequences. Aliso 22: 372-395.
  • Friesen, N. & Fragman-Sapir, O. (2014) A new Allium species from section Molium from Israel: A. akirense (Amaryllidaceae). Phytotaxa 173: 140-148. http://dx.doi.org/10.11646/phytotaxa.173.2.4
  • Friesen, N., Herden, T. & Schoenfelder, P. (2015) Allium canariense (Amaryllidaceae), a species endemic to the Canary Islands. Phytotaxa 221: 1-20. http://dx.doi.org/10.11646/phytotaxa.221.1.1
  • Guetat, A., Vilatersana, R., Neffati, M. & Boussaid, M. (2010) Genetic diversity in Tunisian rosy garlic populations (Allium roseum L.) as evidenced by chloroplastic DNA analysis: Sequence variation of non-coding region and intergenic spacers. Biochemical Systematics and Ecology 38: 502-509. http://dx.doi.org/10.1016/j.bse.2010.05.005
  • Herden, T., Neuffer, B. & Friesen, N. (2012) Allium ursinum L. in Germany-surprisingly low genetic variability. Feddes Repertorium 123: 81-95. http://dx.doi.org/10.1002/fedr.201200019
  • Herden, T., Hanelt, P. & Friesen, N.(2016) Phylogeny of Allium L. subgenus Anguinum (G.Don ex W.D.J.Koch) N.Friesen (Amaryllidaceae). Molecular Phylogenetics and Evolution 95: 79-93. http://dx.doi.org/10.1016/j.ympev.2015.11.004
  • Hermann, F. (1936) Die Pflanzendecke des Strandsha-Gebirges. Repertorium Specierum Novarum Regni Vegetabilis, Beiheft 87: 1-103.
  • Hermann, F. (1939) Sectiones et subsectiones nonnulae europaeae generis Allium. Repertorium Specierum Novarum Regni Vegetabilis 46: 57-58.
  • Huang, D.-Q., Yang, J.-T., Zhou, C.-J., Zhou, S.-D. & He, X.-J. (2014) Phylogenetic reappraisal of Allium subgenus Cyathophora (Amaryllidaceae) and related taxa, with a proposal of two new sections. Journal of Plant Research 127: 275-286. http://dx.doi.org/10.1007/s10265-013-0617-8
  • Jones, R.N. & Rees, H. (1968) Nuclear DNA variation in Allium. Heredity 23: 591-605. http://dx.doi.org/10.1038/hdy.1968.76
  • Kudrjashova, G.L. (1988) Cytotaxonomical study of Allium saxatile (Alliaceae) and closely-related species from the Caucasus and the European part of the USSR. Botanicheskii Zhurnal 73: 665-669.
  • Labani, R.M. & Elkington, T.T. (1987) Nuclear DNA variation in the genus Allium L. (Liliaceae). Heredity 59: 119-128. http://dx.doi.org/10.1038/hdy.1987.103
  • Levan, A. (1935) Cytological studies in Allium, IV: the chromosome morphology of some diploid species of Allium. Hereditas 20: 289- 330. http://dx.doi.org/10.1111/j.1601-5223.1935.tb03192.x
  • Levan, A., Fredga, K. & Sandberg, A.A. (1964) Nomenclature for centromeric position on chromosomes. Hereditas 52: 201-220. http://dx.doi.org/10.1111/j.1601-5223.1964.tb01953.x
  • Love, A. (ed.) (1980) Chromosome number reports LXVIII. Taxon 29: 538-542.
  • Lovric, A.Z. (1971 publ. 1972) Nouveautes de la flore halophile du Littoral croate. Osterreichische botanische Zeitschrift 119: 567-571.
  • Magulaev, A. (1976) The chromosome numbers of flowering plants of the Northern Caucasus (Part II). In: Galushko, A.I. (Ed.) Flora Severnogo Kavkaza i voprosy ee istorii 2. Stavropolsky gos. ped. institut, Stavropol, pp. 51-62.
  • Marschall von Bieberstein, F.A. (1798) Tableau des provinces situees sur la cote occidentale de la mer Caspienne, entre les fleuves Terek et Kour. St Petersbourg, 120 pp.
  • Mashayekhi, S. & Columbus, J.T. (2014) Evolution of leaf blade anatomy in Allium (Amaryllidaceae) subgenus Amerallium with a focus on the North American species. American Journal of Botany 101: 63-85. http://dx.doi.org/10.3732/ajb.1300053
  • Miceli, P. & Garbari, F. (1980) Il genere Allium L. in Italia: X. Allium ericetorum Thore ed Allium saxatile M.Bieb. Atti della Societa Toscana di Scienze Naturali, Memorie, Serie B 87: 51-69.
  • Mikheev, A.D. (2004) Generum Allium L. (Alliaceae) et Gladiolus L. (Iridaceae) species novae e Caucaso. Novosti Sistematiki Vysshikh Rastenii 36: 96-100.
  • Moore, R.J. (Ed.) (1977) Index to plant chromosome numbers for 1973/74. Regnum Vegetabile 96: 1-257.
  • Nanushyan, E.R. & Polyakov, V.J. (1989) Zavisimost mezhdu kolichestvom DNK, tolshchinoy mitoticheskikh khromosom i obyemom pyltsevykh zeren u nekotorykh vidov roda Allium L. Biologicheskiye Nauki (Moskva) 8: 50-56.
  • Nyman, C.F. (1882) Conspectus Florae Europaeae 4. Typis Officinae Bohlinianae, Orebro, pp. 677-858. http://dx.doi.org/10.5962/bhl.title.10533
  • Oxner, A. (1935) Liliaceae. In: Lyaskivskiy, M., Lavrenko, E., Oppermann, P., Kotov, M. & Oleksiyev, A. (Eds.) Flora of the UkrSSR: Manual of vascular plants and higher cryptogams of the Ukrainian SSR 1. State Publishers of Agricultural Literature of the Ukrainian SSR, Kyiv, pp. 285-318.
  • Oyuntsetseg, B., Blattner, F.R. & Friesen, N. (2012) Diploid Allium ramosum from East Mongolia: A missing link for the origin of the crop species A. tuberosum? Erforschung biologischer Ressourcen der Mongolei (Halle/Saale) 12: 415-424.
  • Ozhatay, F.N., Kocyigit, M. & Akalin Urusak, E. (2012) One more Allium species for the Turkish flora: Allium saxatile. Turkish Journal of Botany 36: 644-649. http://dx.doi.org/10.3906/bot-1104-22
  • Peruzzi, L. & Eroglu, H. (2013) Karyotype asymmetry: again, how to measure and what to measure? Comparative Cytogenetics 7: 1-9. http://dx.doi.org/10.3897/CompCytogen.v7i1.4431
  • Peruzzi, L. Carta,A. & Altinordu, F. (2016) Chromosome diversity and evolution in Allium (Amaryllidaceae,Allioideae). Plant Biosystems. [Published online] http://dx.doi.org/10.1080/11263504.2016.1149123
  • Pogosian,A.I. (1983) Chromosome numbers of some species of the genus Allium (Alliaceae) distributed in Armenia and Iran. Botanicheskii Zhurnal 68: 652-660.
  • Pogosian, A.I. (1997) Chromosome numbers in some species of monocotyledons from the Transcaucasia. Botanicheskii Zhurnal 82 (6): 117-118.
  • Posada, D. & Crandall, K.A. (1998) Modeltest: testing the model of DNA substitution. Bioinformatics 14: 817-818. http://dx.doi.org/10.1093/bioinformatics/14.9.817
  • Radic, J. (1990) Contribution to the knowledge of reproductive peculiarity of genus Allium L. in the area Podbiokovlje. Razprave Slovenska Akademija Znanosti in Umetnosti. Razred za Naravoslovne Vede 31: 247-269.
  • Redoute, P.J. (1807) Les Liliacees 3. Didot Jeune, Paris, sine pag. http://dx.doi.org/10.5962/bhl.title.537
  • Ronquist, F. & Huelsenbeck, J.P. (2003) MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19: 1572- 1574. http://dx.doi.org/10.1093/bioinformatics/btg180
  • Ruprecht, F.J. (1869) Flora Caucasi. Pars I. Memoires de l'Academie Imperiale des Sciences de Saint Petersbourg. Ser. 7 14: 1-302.
  • de Sarker, D., Johnson, M.A.T., Reynolds,A. & Brandham, P.E. (1997) Cytology of the highly polyploid disjunct species, Allium dregeanum (Alliaceae), and of some Eurasian relatives. Botanical Journal of the Linnean Society 124: 361-373. http://dx.doi.org/10.1006/bojl.1997.0109
  • Sennikov, A.N. & Seregin, A.P. (2014) Nomenclatural corrections in vascular plants, 1. Valid publication of Allium savranicum "Besser". Phytotaxa 161 (1): 97-100. http://dx.doi.org/10.11646/phytotaxa.161.1.5
  • Sennikov, A.N. & Seregin, A.P. (2015) What happens to Allium saxatile M.Bieb. (Amaryllidaceae)? An unknown story of the well-known name. Taxon 64: 1294-1300. http://dx.doi.org/10.12705/646.11
  • Seregin, A.P. (2012) Allium tarkhankuticum (Amaryllidaceae), a new species of section Oreiprason endemic to the Crimean steppe, Ukraine. Phytotaxa 42 (1): 9-18. http://dx.doi.org/10.11646/phytotaxa.42.1.2
  • Seregin, A.P. & Friesen, N. (2015) Molecular and morphological revision reveals different evolution patterns in Allium sect. Oreiprason and sect. Falcatifolia (Amaryllidaceae). In: Timonin, A.C. (Ed.) Semicentenary after Konstantin Meyer: XIII Moscow symposium on plant phylogeny: Proceedings of the international conference (February 2-6, 2015, Moscow). Moscow, MAKS Press, pp. 353- 356. http://dx.doi.org/10.13140/2.1.3932.7526
  • Seregin, A.P., Anackov, G. & Friesen, N. (2015) Molecular and morphological revision of the Allium saxatile group (Amaryllidaceae): geographical isolation as the driving force of underestimated speciation. Botanical Journal of the Linnean Society 178: 67-101. http://dx.doi.org/10.1111/boj.12269
  • Shaw, J., Lickey, E.B., Schilling, E.E. & Small, R.L. (2007) Comparison of whole chloroplast genome sequences to choose noncoding regions for phylogenetic studies in angiosperms: the tortoise and the hare III. American Journal of Botany 94: 275-288. http://dx.doi.org/10.3732/ajb.94.3.275
  • Simmons, M.P. & Ochoterena, H. (2000) Gaps as characters in sequence-based phylogenetic analysis. Systematic Biology 49: 369-381. http://dx.doi.org/10.1093/sysbio/49.2.369
  • Stearn, W.T. (1980) Allium L. In: Tutin, T.G., Heywood, V.H., Burges, N.A., Moore, D.M., Valentine, D.H., Walters, S.M., Webb, D.A.
  • Swofford, D.L. (2002) PAUP*: Phylogenetic analysis using parsimony (*and other methods), version 4.0b10. Sinauer, Sunderland.
  • Taberlet, P., Gielly, L., Pautou, G. & Bouvet, J. (1991) Universal primers for amplification of three non-coding regions of chloroplast DNA. Plant Molecular Biology 17: 1105-1109. http://dx.doi.org/10.1007/BF00037152
  • Tamura, K., Stecher, G., Peterson, D., Filipski, A., & Kumar, S. (2013) MEGA6: molecular evolutionary genetics analysis version 6.0. Molecular Biology and Evolution 30: 2725-2729. http://dx.doi.org/10.1093/molbev/mst197
  • Thompson, J.D., Gibson, T.J., Plewniak, F., Jeanmougin, F. & Higgins, D.G. (1997) The Clustal_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Research 25: 4876-4882. http://dx.doi.org/10.1093/nar/25.24.4876
  • Vosa, C.G. (1977) Heterochromatic patterns and species relationship. Nucleus 20: 33-41.
  • Vvedensky,A.I. (1935) Rod 267. Luk-Allium L. In: Komarov, V.L. (Ed.) Flora URSS 4. Editio Academiae Scientiarium URSS, Leningrad, pp. 112-280. [English translation: Komarov, V.L. (Ed.) (1968) Flora of the USSR, Vol. 4. Israel Program for Scientific Translations, Jerusalem.]
  • Wheeler, E.J., Mashayekhi, S., McNeal, D.W., Columbus, J.T. & Pires, J.C. (2013) Molecular systematics of Allium subgenus Amerallium (Amaryllidaceae) in North America. American Journal of Botany 100: 701-711. http://dx.doi.org/10.3732/ajb.1200641
  • Zuo, L. & Yuan, Q. (2011) The difference between the heterogeneity of the centromeric index and intrachromosomal asymmetry. Plant Systematics and Evolution 297: 141-145. http://dx.doi.org/10.1007/s00606-011-0528-x