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Published January 15, 2015 | Version v1
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Molecular phylogeny confirms the placement of enigmatic Stachys persepolitana in Lamium (Lamiaceae; subfam. Lamioideae)

Creators

  • 1. Norwegian University of Science and Technology, Dept. of Natural History, NO-7491 Trondheim, Norway
  • 2. Department of Biology I, Ludwig-Maximilians Universität München, Menzinger Str. 67, D-80638 München, Germany and GeoBio-Center LMU

Description

Salmaki, Yasaman, Bendiksby, Mika, Heubl, Günther (2015): Molecular phylogeny confirms the placement of enigmatic Stachys persepolitana in Lamium (Lamiaceae; subfam. Lamioideae). Phytotaxa 192 (4): 254-266, DOI: 10.11646/phytotaxa.192.4.3, URL: http://dx.doi.org/10.11646/phytotaxa.192.4.3

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LSID
urn:lsid:plazi.org:pub:C8056B2F3943FF8FFFC2A8593D107774

Cites
Publication: 10.1007/s00606-013-0935-2 (DOI)
Publication: 10.1093/oxfordjournals.molbev.a025813 (DOI)
Publication: 10.1111/j.1096-0031.1996.tb00196.x (DOI)
Publication: 10.2307/2408678 (DOI)
Publication: 10.1007/BF00987959 (DOI)
Publication: 10.1093/molbev/msn083 (DOI)
Publication: 10.1016/S0022-5193(05)80104-3 (DOI)
Publication: 10.1093/bioinformatics/btg180 (DOI)
Publication: 10.1016/j.flora.2007.10.005 (DOI)
Publication: 10.1002/fedr.200811187 (DOI)
Publication: 10.1016/j.flora.2008.11.001 (DOI)
Publication: 10.1007/s00606-011-0450-2 (DOI)
Publication: 10.1111/j.1095-8339.2012.01317.x (DOI)
Publication: 10.1016/j.ympev.2013.07.024 (DOI)
Publication: 10.3417/2007174 (DOI)
Publication: 10.1007/BF00037152 (DOI)
Publication: 10.1073/pnas.95.1.235 (DOI)
Publication: 10.1016/B978-0-12-372180-8.50042-1 (DOI)
Has part
Figure: 10.5281/zenodo.13641944 (DOI)
Figure: 10.5281/zenodo.13641946 (DOI)
Figure: 10.5281/zenodo.13641948 (DOI)

References

  • Adanson, P.M. (1894) Familles des plantes. Vincent, Paris, 640 pp.
  • Ascherson, P. (1864) Flora der Provinz Brandenburg, 2. August Hirschwald, Berlin, 210 pp.
  • Bendiksby, M. Thorbek, L. Scheen, A.-C., Lindqvist, C. & Ryding, O. (2011a). An updated phylogeny and classification of Lamiaceae subfamily Lamioideae. Taxon 60: 471-484.
  • Bendiksby, M., Brysting, A.K., Thorbek, L., Gussarova, G. & Ryding, O. (2011b) Molecular phylogeny and taxonomy of the genus Lamium L. (Lamiaceae): disentangling origins of presumed allotetraploids. Taxon 60: 986-1000.
  • Bendiksby, M., Salmaki, Y., Braucher, C. & Ryding, O. (2013) The generic position of Stachys tibetica Vatke and amalgamation of the genera Eriophyton and Stachyopsis (Lamiaceae subfam. 4 Lamioideae). Plant Systematics and Evolution 300: 961-971. http://dx.doi.org/10.1007/s00606-013-0935-2
  • Bentham, G. (1832-1836) Labiatarum genera et species. James Ridgway and Sons, London, 783 pp.
  • Bentham, G. (1848) Labiatae. In: De Candolle, A.P. (Ed.) Prodromus Systematis Naturalis Regni Vegetabilis, vol. 12. Victor Masson, Paris, pp. 27-603.
  • Bhattacharjee, R. (1982) Taxonomic studies in Stachys, Part II, a new infrageneric classification of Stachys L. Notes from the Royal Botanical Garden Edinburgh 38: 65-96.
  • Boissier, E. (1846) Diagnoses plantarum Orientalium novarum, vol. 7. [ser. 1] B. Hermann, Leipzig, pp. 56-57.
  • Boissier, E. (1879) Flora orientalis. vol. 4(2). H. Georg. Genevae & Basilea, pp. 714-749.
  • Bornmuller, J. (1915) Reliquiae Straussianae weitere Beitrage zur Kenntnis der Flora des westlichen Persiens. Beihefte zum Botanischen Centralblatt 2: 165-269.
  • Briquet, (1895-1897) Labiatae. In: Engler, A. & Prantl, K. (Eds.) Die Naturlichen Pflanzenfamilien, vol 4. Wilhelm Engelmann, Leipzig, 183-375 pp.
  • Cunningham, C.W. (1997) Can three incongruence tests predict when data should be combined? Molecular Biology and Evolution 14: 733-740. http://dx.doi.org/10.1093/oxfordjournals.molbev.a025813
  • Dumortier, B.C. (1827) Florula Belgica. J. Casterman, Tournay, pp. 44-45.
  • Farris, J.S., Albert, V.A., Kallersjo, M., Lipscomb, D. & Kluge, A.G. (1996) Parsimony jackknifing out performs neighbor-joining. Cladistics 12: 99-124. http://dx.doi.org/10.1111/j.1096-0031.1996.tb00196.x
  • Felsenstein, J. (1985) Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39: 783-791. http://dx.doi.org/10.2307/2408678
  • Govaerts, R., Paton, A.J., Harvey, Y. & Navarro, T. (2013) World checklist of Lamiaceae & Verbenaceae. The Board of Trustees of the Royal Botanic Gardens, Kew, Richmond. Available from: http://www.kew.org/wcsp/lamiaceae (accessed 25 May 2013).
  • Hall, T.A. (1999) BioEdit: a user-friendly biological sequence alignment editor and program for Window 95/98/NT. [ser. 41] Nucleic Acid Symposium, pp. 95-98.
  • Jamzad, Z. (2012) Eremostachys and Phlomis. In: Assadi, M., Maassoumi, A.A. & Mozaffarian, V. (Eds.). Flora of Iran 76. Research Institute of Forest and Rengelands, Tehran, pp. 253-337.
  • Linnaeus, C. (1753) Species plantarum, vol. 2. Salvius, Stockholm, pp. 561-1200.
  • Linnaeus, C. (1759) Systema naturae. Salvius, Stockholm, pp. 525-1384.
  • Mennema, J. (1989) A taxonomic revision of Lamium (Lamiaceae). Leiden Botanical Series 11: 1-198.
  • Oxelman, B., Liden, M. & Berglund, D. (1997) Chloroplast rps16 intron phylogeny of the tribe Sileneae (Caryophyllaceae). Plant Systematic and Evolution 206: 393-410. http://dx.doi.org/10.1007/BF00987959
  • Posada, D. (2008) JModelTest: phylogenetic model averaging. Molecular Biology and Evolution 25: 1253-1256. http://dx.doi.org/10.1093/molbev/msn083
  • Rodriguez-Sanchez, F., Oliver, J.L., Marin, A., & Medina, J.R. (1990) The general stochastic model of nucleotide substitution. Journal of Theoretical Biology 142: 485-501. http://dx.doi.org/10.1016/S0022-5193(05)80104-3
  • Ronquist, F. & Huelsenbeck, J.P. (2003) MrBayes 3: bayesian phylogenetic inference under mixed models. Bioinformatics 19: 1572- 1574. http://dx.doi.org/10.1093/bioinformatics/btg180
  • Salmaki, Y., Jamzad, Z., Zarre, S. & Brauchler, C. (2008a) Pollen morphology of Stachys (Lamiaceae) in Iran and its systematic implication. Flora 203: 617-626. http://dx.doi.org/10.1016/j.flora.2007.10.005
  • Salmaki, Y., Zarre, S. & Jamzad, Z. (2008b) Nutlet morphology of Stachys (Lamiaceae) in Iran and its systematic implication. Feddes Repertorium 119: 631-645. http://dx.doi.org/10.1002/fedr.200811187
  • Salmaki, Y., Zarre, S., Jamzad, Z. & Brauchler, C. (2009) Trichome micromorphology of Iranian Stachys (Lamiaceae) with emphasis on its systematic implication. Flora 204: 371-381. http://dx.doi.org/10.1016/j.flora.2008.11.001
  • Salmaki, Y., Zarre, S., Lindqvist, C., Heubl, G. & Brauchler, C. (2011) Comparative leaf anatomy of Stachys (Lamiaceae: Lamioideae) in Iran with a discussion on its subgeneric classification. Plant Systematics and Evolution 294: 109-125. http://dx.doi.org/10.1007/s00606-011-0450-2
  • Salmaki, Y., Zarre, S., Govaerts, R. & Brauchler, C. (2012a) A taxonomic revision of the genus Stachys (Lamiaceae: Lamioideae) in Iran. Botanical Journal of Linnean Society 170: 573-617. http://dx.doi.org/10.1111/j.1095-8339.2012.01317.x
  • Salmaki, Y., Zarre, S., Ryding, O., Lindqvist, C., Scheunert, A., Brauchler, C. & Heubl, G. (2012b) Phylogeny of the tribe Phlomideae (Lamioideae: Lamiaceae) with special focus on Eremostachys and Phlomoides: new insights from nuclear and chloroplast sequences. Taxon 61: 161-179.
  • Salmaki, Y., Zarre, S., Ryding, O., Lindqvist, C., Brauchler, C., Heubl, G., Barber, G. & Bendiksby, M. (2013) Molecular phylogeny of tribe Stachydeae (Lamiaceae subfamily Lamioieae). Molecular Phylogenetics and Evolution 69: 535-551. http://dx.doi.org/10.1016/j.ympev.2013.07.024
  • Sato, Y., Takakura, K.I., Nishida, S. & Nishida, T. (2013) Dominant occurrence of cleistogamous flowers of Lamium amplexicaule in relation to the nearby presence of an alien Congener L. purpureum (Lamiaceae). International Scholarly Research Notices Ecology 1-6.
  • Scheen, A-C., Bendiksby, M., Ryding, O., Mathiesen, C., Albert, V.A. & Lindqvist, C. (2010) Molecular phylogenetics, character evolution and suprageneric classification of Lamioideae (Lamiaceae). Annals Missouri Botanical Garden 97: 191-219. http://dx.doi.org/10.3417/2007174
  • Swofford, D.L. (2003) PAUP*: Phylogenetic Analysis Using Parsimony (and other methods). Version 4.0b10, Sinauer, Sunderland, Massachusetts.
  • Taberlet, P., Gielly, L., Pautou, G. & Bouvet, J. (1991) Universal primers for amplification of three non-coding regions of chloroplast DNA. Plant Molecular Biology 17: 1105-1109. http://dx.doi.org/10.1007/BF00037152
  • Vargas, P., Baldwin, B.G. & Constance, L. (1998) Nuclear ribosomal DNA evidence for a western North American origin of Hawaiian and South American species of Sanicula (Apiaceae). Proceedings of the National Academy of Sciences of the United States of America 95: 235-240. http://dx.doi.org/10.1073/pnas.95.1.235
  • White, T.J., Bruns, T., Lee, S. & Taylor, J. (1990) Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis, M.A., Gelfand, D.H., Sninsky, J.J. & White, T.J. (Eds.) PCR protocols: A guide to methods and applications. Academic Press, San Diego, pp. 315-322. http://dx.doi.org/10.1016/B978-0-12-372180-8.50042-1