Published September 2, 2024 | Version V1.1
Dataset Open

Datasets for testing the robustness of LiDAR vegetation metrics to varying point densities

Description

The calculation of vegetation metrics from LiDAR point clouds might be affected by the available point density of a dataset. Testing how the same LiDAR vegetation metrics differ with different point densities can therefore inform about their robustness for upscaling metrics to other areas or other LiDAR point clouds. The datasets made available here were generated to test the robustness of LiDAR vegetation metrics to varying point densities and spatial resolutions (i.e., plots of 1 × 1 m, 2 × 2 m, 5 × 5 m and 10 × 10 m size). A total of 25 LiDAR vegetation metrics representing different aspects of vegetation height, vegetation cover and structural complexity were tested (see metric definition in Kissling et al. 2023, https://doi.org/10.1016/j.dib.2022.108798). The metric calculation was similar to the metric calculation in the Laserchicken software (Meijer et al. 2020, https://doi.org/10.1016/j.softx.2020.100626) and the Laserfarm workflow (Kissling et al. 2022, https://doi.org/10.1016/j.ecoinf.2022.101836). The Dutch AHN4 dataset from the years 2020–2022 with a point density of 20–30 points/m2 was used. Initially, 100 plots (i.e., squared polygons around centre points) were randomly placed across the Netherlands in Dutch Natura 2000 sites that predominantly contain woodland habitats (using shapefiles from the European Environmental Agency). For each centre point, square polygons of the desired resolutions (i.e., 1 × 1 m, 2 × 2 m, 5 × 5 m or 10 × 10 m plot size) were generated. The square polygons were subsequently used to clip the LiDAR point clouds from the Dutch AHN4 point cloud dataset. Since not all locations of the 100 randomly placed plots contained points, the actual sample sizes were slightly smaller than 100, i.e., 94 plots for the 1 × 1 m, 2 × 2 m and 5 × 5 m resolution and 95 plots for the 10 × 10 m resolution. Metrics were calculated with the original point density of the Dutch AHN4 dataset (20–30 points/m2) and with six systematically down-sampled point clouds for the same plots (i.e., keeping 5%, 10%, 20%, 40%, 60% and 80% of the points in the original point clouds). For each clipped point cloud of a plot at a given resolution, the points were first sorted according to their GPS acquisition time (from earliest to latest). Points were then systematically discarded and only 5%, 10%, 20%, 40%, 60% and 80% of the points in the original point clouds were kept. The kept points were used for calculating the 25 LiDAR vegetation metrics.

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1_Geolocation_of_Habitats.zip

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Additional details

Funding

MAMBO – Modern Approaches to the Monitoring of BiOdiversity 101060639
European Commission

Dates

Collected
2020-03-01
Start date of acquisition time of airborne LiDAR point clouds (AHN4)
Collected
2022-03-31
End date of acquistion time of airborne LiDAR point clouds (AHN4)

Software

Biodiversity

Country
Netherlands

Audiovisual core

Subject part
Europe

References

  • Kissling, W.D., Shi, Y., Koma, Z., Meijer, C., Ku, O., Nattino, F., Seijmonsbergen, A.C., & Grootes, M.W. (2023). Country-wide data of ecosystem structure from the third Dutch airborne laser scanning survey. Data in Brief, 46, 108798. https://doi.org/10.1016/j.dib.2022.108798
  • Meijer, C., Grootes, M.W., Koma, Z., Dzigan, Y., Gonçalves, R., Andela, B., van den Oord, G., Ranguelova, E., Renaud, N., & Kissling, W.D. (2020). Laserchicken—A tool for distributed feature calculation from massive LiDAR point cloud datasets. SoftwareX, 12, 100626. https://doi.org/10.1016/j.softx.2020.100626
  • Kissling, W.D., Shi, Y., Koma, Z., Meijer, C., Ku, O., Nattino, F., Seijmonsbergen, A.C., & Grootes, M.W. (2022). Laserfarm – A high-throughput workflow for generating geospatial data products of ecosystem structure from airborne laser scanning point clouds. Ecological Informatics, 72, 101836. https://doi.org/10.1016/j.ecoinf.2022.101836