Published August 27, 2024
| Version v1.1
Software
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fiberseq/FiberHMM: FiberHMM v1.1
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Description
Made major changes to apply_model:
- Now reads the input bed in chunks and writes processed reads as tempfiles to minimize memory usage.
- Simplified the processing of the reads into the bed12 format, significantly speeding up the script.
Added a parallelized version of apply_model:
- Linearly increases speed based on number of CPU cores.
- Has some stability issues with high CPU counts.
Files
fiberseq/FiberHMM-v1.1.zip
Files
(159.7 kB)
| Name | Size | Download all |
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md5:5fc80c179a3456c2bb6d65039417853c
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Additional details
Related works
- Is supplement to
- Software: https://github.com/fiberseq/FiberHMM/tree/v1.1 (URL)