Published August 27, 2024
| Version v1
Dataset
Open
Supplementary data: ONT for Listeria monocytogenes outbreak detection
Description
Supplementary data for the publication "Oxford Nanopore’s 2024 sequencing technology for Listeria monocytogenes outbreak detection and source attribution: progress and clone-specific challenges"
- L. monocytogenes assemblies generated from
- Illumina-only data (shovill)
- ONT-only data (100x coverage, sup@v5.0 + flye + flye polisher + medaka [model r103_min_high_g360])
- ONT + Illumina data (100x ONT coverage, sup@v5.0 + flye + flye polisher + polypolish)
- Raw ONT pod5 data from three L. monocytogenes isolates (N19-1094, N21-2956, N23-1883) with GAAG6mAC / GT4mCTTC methylations, among other methylated motifs
Files
Hybrid_assemblies.zip
Files
(25.8 GB)
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