peterjc/thapbi-pict: THAPBI PICT v1.0.14

Released on PyPI 2024-08-26:

https://pypi.org/project/thapbi-pict/1.0.14/

Added a fifth synthetic control to the default DB, now used in the revised protocol at the Hutton Institute to construct mock-communities with magnitude step in concentration for use with the Illumina NextSeq an potentially higher read depth.

The pipeline and prepare-reads commands now support an optional -k or --markers argument to restrict the analysis to a subset of of the markers defined in a multiple-marker database. An example use-case would be processing our historic MiSeq plates using ITS1 only when using a DB containing ITS1 and rps10 marker definitions. The default remains looking for all defined markers.