Inputs & results for "Identifying circular DNA using short-read mapping"

* `inputs`: Contains genome assemblies, annotations, and sample sheets for the Nextflow pipeline

        * `parasite_species`: Contains the sample sheet and input data for the parasite/related species dataset

        * `parasitoid_wasps`: Contains the sample sheet and input data for the parasitoid wasp dataset

 

* `results`: Contains filtered BAM and coverage files, figures, and `GenomeInfo`-filtered example files for the parasitoid wasp and parasite/related species datasets

        * `parasite_species`:

                * `bam_files`: Contains BAM files with mapped distances >= 1 kb

               * `coverage_files`: Contains coverage depth files filtered by the BAM files

               * `insert_filtered_results`: Contains examples of filtered file outputs from the `GenomeInfo` class. The complete set of outputs can be found on Zenodo.

               * `fig`: Figures generated for the pub.

        * `parasitoid_wasps`:

               * `bam_files`: Contains BAM files with mapped distances >= 1 kb

               * `coverage_files`: Contains coverage depth files filtered by the BAM files

               * `fig`: Figures generated for the pub.

               * `hyposoter_didymator_blastx_results`: Contains the manual BLASTx results from the _Hyposoter didymator_ search.