Published August 21, 2024
| Version v1.0.0
Software
Open
maurya-anand/getBamDepth: v1.0.0
Authors/Creators
Description
Changelog
All notable changes to this project will be documented in this file.
[1.0.0] - 2023-07-04
Added
- Initial release
- Adapted semantic versioning for Zenodo.
Technical info (English)
This tool calculates the average depth of coverage for regions specified in a BED file. The depth of coverage can be calculated from a BAM/SAM/CRAM file using `samtools` or from a pre-calculated depth file. The script also calculates the number of bases in each region that meet certain depth thresholds.
Files
maurya-anand/getBamDepth-v1.0.0.zip
Files
(1.5 MB)
| Name | Size | Download all |
|---|---|---|
|
md5:98e377b0a890360cc3827e0ae0bd77a5
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1.5 MB | Preview Download |
Additional details
Related works
- Is supplement to
- Software: https://github.com/maurya-anand/getBamDepth/tree/v1.0.0 (URL)
Software
- Repository URL
- https://github.com/maurya-anand/getBamDepth
- Programming language
- Perl
- Development Status
- Active