Spatiotemporal dynamics of locomotor decisions in Drosophila melanogaster
Description
Overview
This repository is associated with the paper "Spatiotemporal dynamics of locomotor decisions in Drosophila melanogaster".
All data and analyses required to reproduce our results are available in the SpatiotempDM folder.
Data
All data required to reproduce our results are available in the SpatiotempDM/datafiles folder, with raw data available in the SpatiotempDM/datafiles/rawdata folder.
Analysis
The SpatiotempDM/analyses folder consists of all MATLAB code (R2023b) required to reproduce experimental and simulation figures from the paper, with custom functions available in SpatiotempDM/analyses/customfuns.
Data pipeline
For data pipeline and further information see:
data_pipeline.pdf
spatiotempDM_pipline_info.pdf
ABM simulations
Python script required for simulating Agent Based Modeling are available in the ABM-Drosophila folder.
Code contributors
SpatiotempDM folder: This code was authored by Lior Lebovich, 2024.
ABM-Drosophila folder: This code was authored by Tom Alisch, 2024.
Cite
If you use code from this repository, please cite it using this DOI: 10.5281/zenodo.13352340
Files
ABM-Drosophila.zip
Files
(11.0 GB)
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md5:402710fe806330e4bb71e38f4f629140
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Additional details
Software
- Repository URL
- https://github.com/Lior-Lebovich/SpatiotempDM
- Programming language
- MATLAB, Python