Published August 16, 2024 | Version 0.1.0
Dataset Open

Brightfield images of cells and spheroids in wells annotated with bounding boxes

  • 1. DFG cluster of excellence 'Physics of Life', TU Dresden
  • 2. ROR icon Max Planck Institute of Molecular Cell Biology and Genetics

Description

The images in this dataset show cells in different developmental stages upon forming spheroids. They can go through several developmental sages: Starting from cells, they turninto compacted objects and then into spheroids. Ultimately, they can die and disintegrate. The objects are annotated with bounding boxes that carry these respective labels. The dataset in its current form can be upload to an OMERO server using the omero-cli-transfer package - simply download the zip file, log into your omero server and use the `omero transfer unpack` command as shown on the omero-cli-transfer documentation.

The dataset can be used to train object detection models such as a yolo classifier - the linked repository provides a tutorial on how to do so.

Files

yolo_omero_dataset.zip

Files (29.6 MB)

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md5:72337e493c7997927fa567f94f090859
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Additional details

Dates

Created
2024-08-16

Software