Published August 14, 2024 | Version v1
Dataset Open

Datasets for optical tweezer autoregressive hidden Markov modeling

Contributors

Contact person:

Data collector:

  • 1. Boston University

Description

Data to regenerate figures and tables analyzing optical tweezer data with arHMM. OT_arHMM.zip contains the ot_arhmm library needed to analyze these files. scripts.zip contains all the jupyter notebooks used to analyze data and make figures and tables. data.zip contains the raw data and processed_data.zip contains data that has already been put through the HMMs for analysis. These processed files can be generated from the raw data by running the analyze_all.ipynb notebook. All other notebooks require processed files to be present before running.

Files

scripts.zip

Files (1.2 GB)

Name Size Download all
md5:b2f87a0b707b4e13efa8dae1284f32af
526.3 MB Preview Download
md5:1f7560591570a2d70c7fcf0b2470757e
9.9 kB Preview Download
md5:d1ebbdfa00d9769ca26f31be2fc12f8b
624.5 MB Preview Download
md5:943469efd60e51218a93c5073b9cdeb8
13.6 kB Preview Download

Additional details

Software

Repository URL
https://github.com/kamenetska-lab/OT_arHMM
Programming language
Python