MatLab and Rmarkdown workflow for data analysis and figure production related to 'In situ benthic community response to a phytodetritus pulse in the Cabo Verde Abyssal Basin (tropical NE Atlantic)''

Workflow of data analysis and figure production related to the publication 'In situ benthic community response to a phytodetritus pulse in the Cabo Verde Abyssal Basin (tropical NE Atlantic)' in Progress in Oceanography (in press). Data required for the workflow can be found in PANGAEA (de Jonge et al., 2024). Relates to the iMirabilis2 expedition report (Orejas et al., 2022).

MatLab workflow includes all functions and step-by-step use of the input files available from PANGAEA, output images related to the optodes recalibrations, and output images of the calculated oxygen concentration profiles over time during all incubations the optodes were functional.

The Rmarkdown workflow includes the full processing workflow of the input files available from PANGAEA, and includes the original Rmarkdown file, as well as the HTML and PDF outputs.

de Jonge, Danielle; Gaurisas, Daniela Y; Smith, Alycia J; Holmes, Eloise; Orejas, Covadonga; Mosquera Giménez, Ángela; Roberts, J Murray; Bernadino, Angelo; Sweetman, Andrew K (2024): Benthic Chamber Lander stable isotope tracer experiments in the Cabo Verde Abyssal Basin (tropical East Atlantic) [dataset]. PANGAEA, https://doi.org/10.1594/PANGAEA.963084.

Orejas, C., Huvenne, V., Sweetman, A.K., Vinha, B., Abella, J.C., Andrade, P., Afonso, A., Antelo, J., and others, 2022. Expedition report iMirabilis2 survey. https://doi.org/https://doi.org/10.5281/zenodo.6352141.