Biodiversity Literature Repository
Published December 1, 2020 | Version v1
Journal article Open

Soil protist life matters!

Creators

  • 1. JF BLUmeNbacH INStitUte OF ZOOLOgy aND ANtHROPOLOgy, UNiveRSity OF GöttiNgeN, GöttiNgeN, GeRmaNy

Description

Krashevska, Valentyna (2020): Soil protist life matters! Soil Organisms 92 (3): 189-196, DOI: 10.25674/SO92iSS3PP189, URL: http://dx.doi.org/10.25674/so92iss3pp189

Files

source.pdf

Files (1.2 MB)

Name Size Download all
md5:a88d393aad310ff746db337fbaceb5f5
1.2 MB Preview Download

Linked records

Additional details

Identifiers

LSID
urn:lsid:plazi.org:pub:FF8D393AAD31FFF7FFDB337FFFCEFFF5

Related works

Has part
Figure: 10.5281/zenodo.13194231 (DOI)
Figure: 10.5281/zenodo.13194233 (DOI)

References

  • Adl, S. M., D. Bass, C. E. Lane, J. Lukes, C. L. Schoch & A. Smirnov (2019): Revisions to the classification, nomenclature, and diversity of eukaryotes. - Journal of Eukaryotic Microbiology 66: 4-119.
  • Altenburger, A., F. Ekelund & C. S. Jacobsen (2010): Protozoa and their bacterial prey colonize sterile soil fast. - Soil Biology and Biochemistry 42: 1636-1639.
  • Bar-On, Y. M., R. Phillips & R. Milo (2018): The biomass distribution on Earth. - Proceedings of the National Academy of Sciences 115: 6506-6511.
  • Burki, F., A. J. Roger, M. W. Brown & A. G. B. Simpson (2020): The new tree of eukaryotes.- Trends in Ecology & Evolution 35: 43-55.
  • Bonkowski, M. & M. Clarholm (2012): Stimulation of plant growth through interactions of bacteria and protozoa:testing the auxiliary microbial loop hypothesis. - Acta Protozoologica 51: 237-247.
  • Caron, D. A., A. Z. Worden, P. D. Countway, E. Demir & K. B. Heidelberg (2008): Protists are microbes too: a perspective. - The ISME Journal 3: 4-12.
  • Charman, D.J. (2001): Biostratigraphic and palaeoenvironmental applications of testate amoebae. - Quaternary Science Reviews 20: 1753-1764.
  • de Vargas, C., S. Audic, N. Henry, J. Decelle, F. Mahe & R. Logares (2015): Ocean plankton. Eukaryotic plankton diversity in the sunlit ocean. - Science 348: 1261605.
  • de Ruiter, P. C., A. M. Neutel & J. C. Moore (1995): Energetics, patterns of interaction strengths, and stability in real ecosystems. - Science 269: 1257-1260.
  • Decaens, T. (2010): Macroecological patterns in soil communities. - Global Ecology and Biogeography 19: 287-302.
  • Delgado-Baquerizo, M., A. M. Oliverio, T. E. Brewer, A. Benavent-Gonzalez, D. J. Eldridge & R. D. Bardgett (2018):A global atlas of the dominant bacteria found in soil. - Science 359: 320-325.
  • Domonell, A., M. Brabender, F. Nitsche, M. Bonkowski & H. Arndt (2013): Community structure of cultivable protists in different grassland and forest soils of Thuringia. - Pedobiologia 56: 1-7.
  • Ekelund, F.(1998):Enumeration and abundance of mycophagous protozoa in soil, with special emphasis on heterotrophic flagellates. - Soil Biology and Biochemistry 30: 1343-1347.
  • Falkowski, P. G. (2002): The ocean's invisible forest. - Scientific American 287: 54-61.
  • Fournier, B., E. Samaritani, B. Frey, C. V. W Seppey., E. Lara & T. J. Heger (2020): Higher spatial than seasonal variation in floodplain soil eukaryotic microbial communities. - Soil Biology and Biochemistry 147: 107842.
  • Gao, Z., I. Karlsson, S. Geisen, G. Kowalchuk & A. Jousset (2019): Protists: Puppet Masters of the Rhizosphere Microbiome. - Trends in Plant Science 24: 165-176.
  • Griggs, D., M. Stafford-Smith, O. Gaffney, J. Rockstrom, M. C. Ohman & P. Shyamsundar (2013): Sustainable development goals for people and planet. - Nature 495: 305-307.
  • Geisen, S. & M. Bonkowski (2018): Methodological advances to study the diversity of soil protists and their functioning in soil food webs. - Applied Soil Ecology 123: 328-333.
  • Geisen, S., D. H. Wall & W. H. van der Putten (2019): Challenges and opportunities for soil biodiversity in the anthropocene. - Current Biology 29: R1036-R1044.
  • Geisen, S., S. Hu, T. E. E. de la Cruz & G. F. Veen (in press 2020): Protists as catalyzers of microbial litter breakdown and carbon cycling at different temperature regimes. - The ISME Journal.
  • Geisen, S., J. Rosengarten, R. Koller, C. Mulder, T. Urich & M. Bonkowski (2015): Pack hunting by a common soil amoeba on nematodes. - Environmental Microbiology 17: 4538-4546.
  • Geisen, S., R. Koller, M. Hunninghaus, K. Dumack, T. Urich & M. Bonkowski (2016): The soil food web revisited: Diverse and widespread mycophagous soil protists. - Soil Biology and Biochemistry 94: 10-18.
  • Geisen, S., E. A. D. Mitchell, S. Adl, M. Bonkowski, M. Dunthorn, & F. Ekelund (2018): Soil protists: a fertile frontier in soil biology research. - FEMS Microbiology Reviews 42: 293-323.
  • Geisen, S., E. A. D. Mitchell, D. M. Wilkinson, S. Adl, M. Bonkowski & M. W. Brown (2017): Soil protistology rebooted: 30 fundamental questions to start with. - Soil Biology and Biochemistry 111: 94-103.
  • Geisen, S., M. J. I. Briones, H. Gan, V. M. Behan-Pelletier, V.-P. Friman & G. A. de Groot (2019): A methodological framework to embrace soil biodiversity. - Soil Biology and Biochemistry 136: 107536.
  • George, P. B. L., D. Lallias, S. Creer, F. M. Seaton, J. G. Kenny & R. M. Eccles (2019): Divergent national-scale trends of microbial and animal biodiversity revealed across diverse temperate soil ecosystems. - Nature Communications 10: 1107.
  • Glucksman, E., Bell, T., Griffiths, R. I. & Bass, D. (2010): Closely related protist strains have different grazing impacts on natural bacterial communities. - Environmental Microbiology 12: 3105-3113.
  • Henkes, G. J., E. Kandeler, S. Marhan, S. Scheu & M. Bonkowski (2018): Interactions of mycorrhiza and protists in the rhizosphere systemically alter microbial community composition, plant shoot-to-root ratio and within-root system nitrogen allocation. - Frontiers in Environmental Science 6: 117.
  • Jassey, V. E. J., C. Signarbieux, S. Hattenschwiler, L. Bragazza, A. Buttler & F. Delarue (2015): An unexpected role for mixotrophs in the response of peatland carbon cycling to climate warming. - Scientific Reports 5: 16931.
  • Jousset, A., L. Rochat, M. Pechy-Tarr, C. Keel, S. Scheu & M. Bonkowski (2009): Predators promote defence of rhizosphere bacterial populations by selective feeding on non-toxic cheaters. - The ISME Journal 3: 666-674.
  • Kamoun, S. (2001): Nonhost resistance to Phytophthora: novel prospects for a classical problem. - Current Opinion in Plant Biology 4: 295-300.
  • Keeling, P. J. (2019): Combining morphology, behaviour and genomics to understand the evolution and ecology of microbial eukaryotes. - Philosophical Transactions of the Royal Society B: Biological Sciences 374: 20190085.
  • Krashevska, V., D. Sandmann, M. Maraun & S. Scheu (2014): Moderate changes in nutrient input alter tropical microbial and protist communities and belowground linkages. - The ISME Journal 8: 1126-1134.
  • Krome, K., K. Rosenberg, C. Dickler, K. Kreuzer, J. Ludwig- Muller & C. Ullrich-Eberius (2010): Soil bacteria and protozoa affect root branching via effects on the auxin and cytokinin balance in plants. - Plant Soil 328: 191-201.
  • Kuikman, P. J., A. G. Jansen, J. A. van Veen & A. J. B. Zehnder (1990): Protozoan predation and the turnover of soil organic carbon and nitrogen in the presence of plants. - Biology and Fertility of Soils 10: 22-28.
  • Kuppardt, A., T. Fester, C. Hartig & A. Chatzinotas (2018): Rhizosphere protists change metabolite profiles in Zea mays. - Frontiers in Microbiology 9: 857.
  • Mahe, F., C. de Vargas, D. Bass, D., L. Czech, A. Stamatakis, E. Lara (2017): Parasites dominate hyperdiverse soil protist communities in Neotropical rainforests. - Nature Ecology & Evolution 1: 0091.
  • Marcisz, K., V. E. J. Jassey, A. Kosakyan, V. Krashevska, D. J. G. Lahr & E. Lara (2020): Testate amoeba functional traits and their use in paleoecology. - Frontiers in Ecology and Evolution 8: 575966.
  • Nguyen, N. H., Z. Song, S. T. Bates, S. Branco, L. Tedersoo & J. Menke (2016): FUNGuild: An open annotation tool for parsing fungal community datasets by ecological guild. - Fungal Ecology 20: 241-248.
  • Oliverio, A. M., S. Geisen, M. Delgado-Baquerizo, F. T. Maestre, B. L. Turner & N. Fierer (2020): The globalscale distributions of soil protists and their contributions to belowground systems. - Science Advances 6: eaax8787.
  • Orgiazzi, A., R. D. Bardgett & E. Barrios (2016): Global soil biodiversity atlas - European Commission.
  • Paseka, R. E., L. A. White, D. B. Van de Waal, A. T. Strauss, A. L. Gonzalez & R. A. Everett (in press 2020): Diseasemediated ecosystem services: Pathogens, plants, and people. - Trends in Ecology & Evolution.
  • Petters, S., A. Soellinger, M. M. Bengtsson & T. Urich (2018): The soil microbial food web revisited with metatranscriptomics - predatory Myxobacteria as keystone taxon? - bioRxiv.
  • Phillips, H. R. P., C. A. Guerra, M. L. C. Bartz, M. J. I. Briones, G. Brown & T. W. Crowther (2019): Global distribution of earthworm diversity. - Science 366: 480.
  • Piwosz, K., T. Shabarova, J. Pernthaler, T. Posch, K. Simek & P. Porcal (2020): Bacterial and eukaryotic small-subunit amplicon data do not provide a quantitative picture of microbial communities, but they are reliable in the context of ecological interpretations. - mSphere 5: e00052-00020.
  • Seppey, C. V. W., D. Singer, K. Dumack, B. Fournier, L. Belbahri & E. A. D. Mitchell (2017): Distribution patterns of soil microbial eukaryotes suggests widespread algivory by phagotrophic protists as an alternative pathway for nutrient cycling. - Soil Biology and Biochemistry 112: 68-76.
  • Schmidt, O., J. Dyckmans & S. Schrader (2016): Photoautotrophic microorganisms as a carbon source for temperate soil invertebrates. - Biology Letters 12: 20150646.
  • Schulz-Bohm, K., S. Geisen, E. R. J. Wubs, C. Song, W. de Boer & P. Garbeva (2017): The prey's scent - Volatile organic compound mediated interactions between soil bacteria and their protist predators. - The ISME Journal 11: 817-820.
  • Sunagawa, S., S. G. Acinas, P. Bork, C. Bowler, S. G. Acinas & M. Babin (2020): Tara Oceans: towards global ocean ecosystems biology. - Nature Reviews Microbiology 18: 428-445.
  • Szelecz, I., B. Fournier, C. Seppey, J. Amendt & E. A. D. Mitchell (2014): Can soil testate amoebae be used for estimating the time since death? A field experiment in a deciduous forest. - Forensic Science International 236: 90-98.
  • Tedersoo, L., M. Bahram, S. Polme, U. Koljalg, N. S. Yorou & R. Wijesundera (2014):Fungal biogeography. Global diversity and geography of soil fungi. - Science 346: 1256688.
  • van den Hoogen, J., S. Geisen, D. Routh, H. Ferris, W. Traunspurger & D. A. Wardle (2019): Soil nematode abundance and functional group composition at a global scale. - Nature 572: 194-198.
  • Wilkinson, D. M. (1998): Fragments of an entangled bank: do ecologists study most of ecology? - Oikos 82: 393-394.
  • Williamson, K. E., J. J. Fuhrmann, K. E. Wommack & M. Radosevich (2017): Viruses in soil ecosystems: an unknown quantity within an unexplored territory. - Annual Review of Virology 4: 201-219.
  • Worden, A. Z., M. J. Follows, S. J. Giovannoni, S. Wilken, A. E. Zimmerman & P. J. Keeling (2015): Environmental science. Rethinking the marine carbon cycle: factoring in the multifarious lifestyles of microbes. - Science 347: 1257594.
  • Xiong, W., Y. Song, K. Yang, Y. Gu, Z. Wei & G. A. Kowalchuk (2020): Rhizosphere protists are key determinants of plant health. - Microbiome 8: 27.
  • Zhao, Z.-B., J.-Z. He, S. Geisen, L.-L. Han, J.-T. Wang & J.- P. Shen (2019): Protist communities are more sensitive to nitrogen fertilization than other microorganisms in diverse agricultural soils. - Microbiome 7: 33.
  • Zhao, Z.-B., J.-Z. He, Z. Quan, C.-F. Wu, R. Sheng & L.- M. Zhang (2020): Fertilization changes soil microbiome functioning, especially phagotrophic protists. - Soil Biology and Biochemistry 148: 107863.

This site uses cookies. Find out more on how we use cookies