Microbiome

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Published July 1, 2018 | Version 1.0.
Software Open

FASPA - Fast Amplicon Sequence Processing and Analysis

Creators

  • 1. Dr.

Description

What is FASPA?

  • FASPA is available on GitHub: https://github.com/StefanPfeiffer80/FASPA.github.io
  • FASPA is a workflow for analyzing 16S rRNA gene Illumina paired-end sequence data.
  • FASPA is a collection of shell bash scripts, perl scripts and R scripts and relies on state of the art programs used in sequence processing, USEARCH and VSEARCH.
  • FASPA output files can be directly used for downstream analyses using e.g. the phyloseq package in R, the Rhea script collection, or the QIIME software package.

 

Contact: microbiawesome@gmail.com.

Files

Files (48.3 kB)

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md5:8e52cd1432eaee9dd7d6b69de682f682
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md5:7e85d400b60a76eeff8a4ae8e1389160
17.6 kB Download

Additional details

Related works

Is supplement to
https://github.com/StefanPfeiffer80/FASPA.github.io (URL)