Published July 11, 2024
| Version v1
Dataset
Open
Supplementary data files for manuscript titled "From spreadsheet lab data templates to knowledge graphs: A FAIR data journey in the domain of AMR research"
Creators
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1.
Fraunhofer Institute for Translational Medicine and Pharmacology
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2.
Enveda Therapeutics (United States)
Description
This data repository contains all the necessary supplementary files for the manuscript titled "From spreadsheet lab data templates to knowledge graphs: A FAIR data journey in the domain of AMR research". Below we provide a brief overview of the data files and their underlying purpose:
- The Data Survey collects relevant project and data set information to set up a Data Management Plan. It can serve as an input for Lab Data Template development.
- The Lab Data Templates facilitate the collection of AMR research data (in vivo and in vitro) in several sub-tables. The Excel format is compatible with upload procedures into the data repository 'grit' and serves as input for a knowledge graph workflow.
- The Data dictionary is connected to the Lab Data Templates and ensures harmonized data entries. In addition, the dictionaries collect metadata beyond the content of the Lab Data Template (e.g. bacterial strain information or compound information) and link to ontologies where possible.
- The FAIR assessments have been used as a primer for improvement of the template. This is the report that is generated through the FAIR-DSM model.
The templates have been used during the IMI2 GNA NOW project to collect information and have been improved according to FAIR standards in collaboration with the IMI FAIRplus project ("post FAIRification").
Files
FAIRplusDSM_GNA-NOW_post.pdf
Files
(1.8 MB)
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Additional details
Funding
- Innovative Medicines Initiative
Software
- Repository URL
- https://github.com/IMI-COMBINE/GNA-NOW
- Programming language
- Python
- Development Status
- Wip