Standard processing of 10X 5k PBMC single cell ATAC-seq data with SnapATAC2

Published July 2024 | Version v3

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Input files for SnapATAC2 tutorial on Galaxy

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atac_pbmc_5k_nextgem_fragments.tsv.gz md5:ecae0fbd7caa00281e19294283b259b0	1.0 GB	Download
BAM_500-PBMC.bam md5:5402601c8f5d211e510c946bc671ffaf	281.5 MB	Download
chrom_sizes.txt md5:2ec34bc27608f33171cffc82c8e2e7c5	401 Bytes	Preview Download
gencode.v46.annotation.gtf.gz md5:68070e3c87f6a0e70af6e4ff4d55f61c	51.0 MB	Download

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Zenodo

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