pysal/pysal: v24.07rc1

Overall, there were 245 commits that closed 180 issues since our last release on 2024-01-31.

<a name="changes-by-package"></a>

Changes by Package

<a name="libpysal"></a>

libpysal

• #698: ENH: Graph IO to classic weights file formats
• #695: import libpysal stuck on loading remote examples
• #718: Add timeout in request to handle off-line use cases in examples
• #719: COMPAT: remove typing from Graph.describe
• #716: Categorical spatial lag using the Graph
• #711: ENH: implement Graph.repr
• #717: ENH: include Graph.describe() to describe neighbourhood values
• #529: [DO NOT MERGE] Change to the new sparse arrays and see what breaks
• #715: PERF: sorting-related improvements in Graph
• #714: Refactor handling of coincident points in triangulation
• #713: Co-location issues with Graph triangulation builders
• #694: ENH: add Graph.build_h3
• #667: Build Graph from H3
• #710: PERF: don't build coincident lookup if not needed
• #709: BUG: misaligned weights in the gabriel graph
• #708: add back numba in Py312 tests
• #590: check when numba is ready for Python 3.12
• #703: DOC: add examples to build_contiguity and build_triangulation
• #697: REF: minor performance improvements in Graph
• #704: Added examples to from_dicts and build_knn.
• #705: DOC: Add examples to build_distance_band
• #702: DOC: add examples to build_block_contiguity
• #701: DOC: add example to Graph.to_W
• #700: DOC: clarify the requirements of the canonical sorting of Graph index
• #687: Ensure Graph.sparse is robust enough
• #696: [pre-commit.ci] pre-commit autoupdate
• #693: Work around GEOS issue in voronoi_frames
• #691: REF: refactor Graph.to_W to avoid perf bottleneck
• #672: Graph.to_W is slow
• #692: COMPAT: compatibility with pandas 3
• #678: ENH: geometry agnostic Voronoi based on shapely
• #665: Interest in Optimal Spatial Matching?
• #685: REF: remove usage of deprecated cascaded_union
• #686: TST: resolve FutureWarnings in graph apply tests
• #684: ImportError: cannot import name 'np' from 'libpysal.common'
• #683: Bump codecov/codecov-action from 3 to 4

<a name="pointpats"></a>

pointpats

• #140: update min supported Python and testing workflow
• #141: bump & sync min reqs [2024-06]
• #139: minimum support Python [2024-06]
• #138: fix typo in random.normal function
• #133: REF: reimplement mrr on top of shapely
• #136: localknox
• #137: Typo in random.normal method that results in errors
• #134: keep members of local knox hotspots

<a name="spaghetti"></a>

spaghetti

• #771: #770 -- doctests after full tests
• #770: doctests as separate action or workflow
• #769: update docstring tests -- numpy-2.0 failures
• #767: current CI failures [2024-06-19]
• #768: fix doctests in CI -- numpy 2.0
• #765: [pre-commit.ci] pre-commit autoupdate
• #764: gpd & shp as hard reqs -- no optional testing -- #763
• #763: 310-no-optional CI failures [2024-03-16]
• #762: 312-dev CI failures [2024-03-16]
• #761: Bump codecov/codecov-action from 3 to 4

<a name="momepy"></a>

momepy

• #625: DOC: update user guide to avoid MultiIndex
• #631: DOC: update rest of the guide
• #628: DOC: User guide fixes for elements examples
• #626: REF: remove result_index attribute from describe_agg
• #627: REF: do not return building_id from generate_blocks
• #606: BUG: verify handling of MultiIndex
• #622: ENH: either support MultiIndex or raise an error when one is given
• #624: DOC: update docstrings to match numpy2 outputs
• #623: TYP: add type hints to the graph module
• #579: API: distinction between libpysal and networkx graphs
• #621: BUG: fix a case when there's only a single building to be passed to voronoi_frames
• #620: ENH: add mean_deviation
• #619: API: deprecate legacy API in favour of Graph-based functional implementation
• #612: API: deprecate legacy API
• #618: minor type hinting fix
• #617: API: allow silencing of FutureWarnings from legacy API
• #616: DOC: expose get_nearest_node, fix fmt
• #615: DOC: remaining examples in the new API
• #610: DOC: add examples
• #614: update precommit to ruff docs dir
• #613: DOC: ruff user guide
• #611: DOC: add first batch of examples + testing
• #609: Faster node density
• #608: BUG: fix describe_ function when count is not present
• #543: GHA: switch to autogenerated release notes
• #582: BUG/ENH: support custom enclosure index is in tessellation and GeoDataFrame as enclosure input
• #592: DOC: add citation.cff
• #544: DOC: update dev installation instructions
• #576: functional node_density implementation
• #575: functional reached calculations
• #572: functional courtyards calculation
• #570: ENH: describe as a replacement of AverageCharacter
• #566: ENH: street_alignment and get_nearest_street
• #559: ENH: refactor tessellation
• #557: ENH: add neighbors
• #556: ENH: mean_interbuilding_distance and building_adjacency
• #555: ENH: neighbor_distance using Graph and new API
• #554: ENH: add alignment to the new API
• #553: ENH: add orientation and shared_walls functional versions
• #600: ENH: add get_nearest_node
• #593: Street profile
• #590: ENH: adaptive buffer as a tessellation limit
• #589: Functional percentiles
• #588: Functional distribution
• #587: Functional dimension
• #586: Functional density
• #584: _describe API refactoring
• #583: Functional arearatio
• #581: Functional diversity
• #580: Functional blocks
• #607: Update release.yml - troubleshoot release action failure
• #604: gha for release notes - #543
• #396: ENH: helper functions for geometry-based network simplification
• #461: TestDistribution.test_MeanInterbuildingDistance failure on dev
• #304: Add GitHub Action to build and push container
• #537: BUG: tessellation may produce overlapping polygons
• #261: EHN: Add SkyViewFactor
• #603: DOC: execute notebooks and ensure they're tested
• #264: ENH: Simple Building Volume Density
• #465: ENH: helper functions part 1
• #562: test efficiency of graphblas in straightness
• #602: API: return morphological tessellation as a GeoDataFrame
• #601: DOC: create usable env on RTD, update clustering
• #599: DOC: User guide refresh
• #598: DOC: note on a precision issue in enclosed_tessellation
• #597: DOC: rework API docs around the new functional stuff
• #596: COMPAT: numpy 2.0 compatibility
• #585: Functional count
• #594: DEP: bump libpysal minimum to 4.11
• #406: API: deprecation decorators for transition to functional API
• #317: Add citation.cff
• #310: ENH: refactor get_network_id based on sindex.nearest_all
• #359: Add osmnx_like keyword to gdf_to_nx
• #478: Enclosure function does not work correctly
• #525: Networkx deprecations
• #497: Resolve geopandas deprecations
• #577: more complete linting & formatting - docs & benchmarks
• #578: linting & formatting for benchmarks/* and docs/*
• #307: gitcount
• #574: MAINT: compatibility, warning cleanup, test lint
• #571: REF: speed-up describe using numba
• #538: ENH: reimplement tessellation using shapely
• #536: notes on plans with the rest of dimension classes
• #568: BUG: fix enclosed tessellation index allocation when threshold eliminates buildings
• #567: TYP: consistency in typing
• #564: CI failure – TestElements.test_Blocks_non_default_index
• #565: TST: check the degree of error in #564
• #563: [pre-commit.ci] pre-commit autoupdate
• #561: GHA: move user guide testing to separate action, add workflow dispatch

<a name="mapclassify"></a>

mapclassify

• #211: WIP classify to rgba
• #216: plot histogram with class bins
• #221: [pre-commit.ci] pre-commit autoupdate
• #215: Add monthly downloads badge to README
• #217: doctest failures [2024-06-23]
• #220: CI: test against Python 3.12
• #219: CI: doctest only on ubuntu latest
• #218: CI: ensure 3.9 envs are compatible
• #214: [CI] failing dev from libpysal.graph --> numpy.float_
• #210: COMPAT: make greedy compatible with future
• #209: 311-dev CI failures [2024-04-01]
• #208: [pre-commit.ci] pre-commit autoupdate
• #207: 311-dev CI failures [2024-03-16]
• #206: Bump codecov/codecov-action from 3 to 4

<a name="spopt"></a>

spopt

• #457: fix numpy=2.0.0 compat -- #456
• #456: numpy>=2.0 failures -- [2024-06-19]
• #454: add OR_classic_problem to README
• #449: testing code cleanup
• #452: numpy DeprecationWarning within pyproj
• #451: codecov acting up a bit – update action
• #450: "Generate and publish the report" not working - remove
• #448: better raises/warns control + DRY out testing
• #453: FutureWarning: The 'unary_union' attribute is deprecated – ignore for now?
• #437: work on resolving warning in CI (2024-01)
• #447: Fix service radius in LSCP GIS notebook
• #446: Unable to run through LSCP example
• #445: [pre-commit.ci] pre-commit autoupdate
• #444: re- lint & re-format repo – #438
• #438: lint spopt/tests/*
• #443: 312-dev CI failures [2024-03-17]

<a name="contributors"></a>

Contributors

Many thanks to all of the following individuals who contributed to this release:

• Anastassiavybornova
• Anna Brazdova
• Daniela Dančejová
• Eli Knaap
• Germano Barcelos
• James Gaboardi
• Krasen Samardzhiev
• Levi John Wolf
• Lisa
• Marek Novotný
• Martin Fleischmann
• Pedro Amaral
• Serge Rey
• Stevee404