Coronavirus Disease Research Community - COVID-19

There is a newer version of the record available.

Published July 4, 2024 | Version 1.28.0
Software Open

Flowminder/FlowKit: 1.28.0

Creators

  • 1. @Flowminder
  • 2. Code AI Ltd.
  • 3. @dotfive
  • 4. Flowminder
  • 5. Gitter

Description

Added

  • Added support for Parquet foreign tables using parquet_fdw

Changed

  • FlowKit test and synthetic data now uses parquet foreign tables.
  • FlowETL is now built on Airflow 2.9.2

[!WARNING] This change is not backwards compatible with earlier releases of FlowDB, and you will need to repopulate your deployment. We recommend combining this change with the new parquet support.

[!WARNING] The location of the parquet files in the container is /parquet_data, if you are testing with larger amounts of data you may wish to add an additional bind mount for this location.

Fixed

Removed

What's Changed

  • Bump urllib3 from 2.2.1 to 2.2.2 in /flowkit_jwt_generator by @dependabot in https://github.com/Flowminder/FlowKit/pull/6661
  • Bump urllib3 from 2.2.1 to 2.2.2 in /flowauth by @dependabot in https://github.com/Flowminder/FlowKit/pull/6662
  • Bump urllib3 from 2.2.1 to 2.2.2 in /flowapi by @dependabot in https://github.com/Flowminder/FlowKit/pull/6663
  • Bump ws from 6.2.2 to 6.2.3 in /flowauth/frontend by @dependabot in https://github.com/Flowminder/FlowKit/pull/6665
  • Bump prettier from 3.3.1 to 3.3.2 in /flowauth/frontend by @dependabot in https://github.com/Flowminder/FlowKit/pull/6653
  • Update CHANGELOG.md by @Thingus in https://github.com/Flowminder/FlowKit/pull/6660
  • Bump cypress from 13.11.0 to 13.12.0 in /flowauth/frontend by @dependabot in https://github.com/Flowminder/FlowKit/pull/6666
  • Bump sqlalchemy from 2.0.30 to 2.0.31 in /flowdb/testdata/synthetic_data by @dependabot in https://github.com/Flowminder/FlowKit/pull/6667
  • Bump sqlalchemy from 2.0.30 to 2.0.31 in /flowauth by @dependabot in https://github.com/Flowminder/FlowKit/pull/6668
  • Bump psutil from 5.9.8 to 6.0.0 in /flowdb by @dependabot in https://github.com/Flowminder/FlowKit/pull/6669
  • Bump sqlalchemy from 2.0.30 to 2.0.31 in /flowmachine by @dependabot in https://github.com/Flowminder/FlowKit/pull/6670
  • Bump jupyter/scipy-notebook from e5ef944 to d641d3e by @dependabot in https://github.com/Flowminder/FlowKit/pull/6672
  • Bump redis from 5.0.6 to 5.0.7 in /flowmachine by @dependabot in https://github.com/Flowminder/FlowKit/pull/6673
  • Bump python-rapidjson from 1.17 to 1.18 in /flowmachine by @dependabot in https://github.com/Flowminder/FlowKit/pull/6677
  • Parquet fdw by @greenape in https://github.com/Flowminder/FlowKit/pull/6675
  • Delarative partitioning by @greenape in https://github.com/Flowminder/FlowKit/pull/6679
  • Bump jupyter/scipy-notebook from d641d3e to 6d5e9b9 by @dependabot in https://github.com/Flowminder/FlowKit/pull/6681
  • Update flowetl.Dockerfile by @Thingus in https://github.com/Flowminder/FlowKit/pull/6685

Full Changelog: https://github.com/Flowminder/FlowKit/compare/1.27.0...1.28.0

Files

Flowminder/FlowKit-1.28.0.zip

Files (22.7 MB)

Name Size Download all
md5:f4b34bbb57f53ef0cbc7f86ea6e7c5cd
22.7 MB Preview Download

Additional details

Related works

Is supplement to
Software: https://github.com/Flowminder/FlowKit/tree/1.28.0 (URL)