Published September 30, 2013
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Development and characterization of microsatellite loci of Microglanis cottoides (Siluriformes: Pseudopimelodidae) and cross-species amplification
Authors/Creators
- 1. Universidade Estadual de Londrina, Programa de Pós-Graduação em Ciências Biológicas, Departamento de Biologia Animal e Vegetal,
- 2. Universidade Estadual de Londrina, Programa de Pós-Graduação em Genética e Biologia Molecular, Departamento de Biologia Geral, Centro de Ciências Biológicas, 86051-990 Londrina, PR, Brazil. shsofia@uel.br (SHS)
- 3. Universidade Paulista Júlio Mesquita Filho, Instituto de Biociências, Departamento de Biociências. Distrito de Rubião Júnior s/n, 18618- 970 Botucatu, SP, Brazil.
Description
Souza-Shibatta, Lenice, Ferreira, Dhiego Gomes, Oliveira, Claudio, Almeida, Fernanda Simões de, Shibatta, Oscar Akio, Sofia, Silvia Helena (2013): Development and characterization of microsatellite loci of Microglanis cottoides (Siluriformes: Pseudopimelodidae) and cross-species amplification. Neotropical Ichthyology 11 (3): 581-585, DOI: 10.1590/S1679-62252013000300011, URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S1679-62252013000300581&lng=en&tlng=en
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- urn:lsid:plazi.org:pub:CB36291B4967182A7E1FFFF2E925FF9F
References
- Alcaraz, H. S. V., W. J. Graca & A. O. Shibatta. 2008. Microglanis carlae, a new species of bumblebee catfish (Siluriformes: Pseudopimelodidae) from the rio Paraguay basin in Paraguay. Neotropical Ichthyology, 6: 425-432.
- Almeida, F. S., M. H. Pelegrinelli & L. M. K. Sodre. 2001. RAPD and isoenzyme analysis of genetic variability in three allied species of catfish (Siluriformes: Pimelodidae) from the Tibagi River, Brazil. Journal of Zoology, 253: 113-120.
- Avise, J. C. 2001. Phylogeography: The History and Formation of Species. Harvard University Press, New Haven, Connecticut.
- Avise, J. C. 2009. Retrospect and prospect. Journal of Biogeography, 36: 3-15.
- Barbara, T., C. Palma-Silva, G. M. Paggi, F. Bered, M. F. Fay & Lexer, C. 2007. Cross-species transfer of nuclear microsatellite markers: potential and limitations. Molecular Ecology, 16: 3759-3767.
- Bertaco, V.A. & A. R. Cardoso. 2005.A new species of Microglanis (Siluriformes: Pseudopimelodidae) from the rio Uruguay drainage, Brazil. Neotropical Ichthyology, 3: 61-67.
- Billotte, N., P. J. Lagoda, A. M. Risterucci & F. C. Baurens. 1999. Microsatellite enriched libraries: applied methodology for the development of SSR markers in tropical crops. Fruits, 54: 277-288.
- Bizerril, C. R. S. F. 1994. Analise taxonomica e biogeografica da ictiofauna de agua doce do leste brasileiro. Acta Biologica Leopoldinense, 18: 51-80.
- Bizerril, C. R. S. F. 1995. Analise da distribuicao espacial da ictiofauna de uma bacia hidrografica do leste brasileiro.Arquivos de Biologia e Tecnologia, 38: 477-499.
- Botstein, D. R. L. White, M. Skolnick & R. W. Davis. 1980. Construction of a Genetic Linkage Map in Man Using Restriction Fragment Length Polymorphisms.American Journal of Human Genetics, 32: 314-331.
- Esguicero,A.L. H. & M.S.Arcifa.2010.Which is the best environment for the development of the early life stages of fish during the dry season? Acta Limnologica Brasiliensia, 22: 267-275.
- Hall, T. A. 1999. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symposium Series, 41: 95-98.
- Hardy, M. E. J., M. Grady & E. J. Routman. 2002. Intraspecific phylogeography of the slender madtom: the complex evolutionary history of the Central Highlands of United States. Molecular Ecology, 11: 2393-2403.
- Lundberg, J. G., A. H. Bornbusch & F. Mago-Leccia. 1991. Gladioglanis conquistador n. sp. from Ecuador with diagnoses of the Subfamilies Rhamdiinae Bleeker and Pseudopimelodidae n. subf. (Siluriformes: Pimelodidae). Copeia, 1991: 190-209.
- Malabarba, L. R. & J. K. F. Mahler-Jr. 1998. Review of the genus Microglanis in the rio Uruguay and coastal drainages of southern Brazil (Ostariophysi: Pimelodidae). Ichthyological Exploration of Freshwaters, 9: 243-254.
- Marshall, T. C., J. Slate, L. E. B. Kruuk & J. M. Pemberton. 1998. Statistical confidence for likelihood-based paternity inference in natural populations. Molecular Ecology, 7: 639-655.
- Mori, H. & O. A. Shibatta. 2006. A new species of Microglanis Eigenmann 1912 (Siluriformes, Pseudopimelodidae) from rio Sao Francisco basin, Brazil. Zootaxa, 1302: 31-42.
- O'Connell, M. & J. M. Wright. 1997. Microsatellite DNA in fishes. Reviews in Fish Biology and Fisheries, 7: 331-363.
- Ottoni, F. P., J. L. O. Mattos & M. A. Barbosa. 2010. Description of a new species of Microglanis from the rio Barra Seca basin, southeastern Brazil (Teleostei: Siluriformes: Pseudopmelodidae). Vertebrate Zoology, 60: 187-192.
- Paetkau, D., W. Calvert, I. Stirling & C. Strobeck. 1995. Microsatellite analysis of population structure in Canadian polar bears. Molecular Ecology, 4: 347-354.
- Peakall, R. & P. E. Smouse. 2006. GENEALEX 6: genetic analysis in Excel. Population genetic software for teaching and research. Molecular Ecology Notes, 6: 288-295.
- Raymond, M. & F. Rousset. 1995. GENEPOP (version 1.2): population genetics software for exact tests and ecumenicism. Journal of Heredity, 86: 248-249.
- Rice, W. R. 1989. Analyzing tables of statistical tests. Evolution, 43: 223-225.
- Rousset, F. 2008. GENEPOP'007: a complete re-implementation the GENEPOP software for Windows and Linux. Molecular Ecology Resources, 8: 103-106.
- Rozen, S. & H. J. Skaletsky. 2000. Primer 3 on the www for general users and for biologist programmers. In: Bioinformatics Methods and Protocols: Methods in Molecular Biology. Pp. 365-386. In: Krawetz S. & S. Misener S (Eds.). Humana Press, Totowa.
- Ruiz, W. B. G. & O. A. Shibatta. 2010.A new species of Microglanis (Siluriformes, Pseudopimelodidae) from lower Rio Tocantins basin, Para, Brazil, with description of superficial neuromasts and pores of lateral line system. Zootaxa, 2632: 53-66.
- Ruiz, W. B. G. & O. A. Shibatta. 2011. Two new species of Microglanis (Siluriformes, Pseudopimelodidae) from the uppermiddle Araguaia basin, Central Brazil. Neotropical Ichthyology, 9: 697-707.
- Sarmento-Soares, L. M., R. F. Martins-Pinheiro, C.C. Chamon & A.T. Aranda. 2006. Microglanis pataxo, a new catfish from southern Bahia coastal rivers, northeastern Brazil (Siluriformes: Pseudopimelodidae). Neotropical Ichthyology, 4: 157-166.
- Schuelke, M. 2000.An economic method for the fluorescent labeling of PCR fragments. Nature Biotechnologies, 18: 223-234.
- Shibatta, O. A. 2003a. Family Pseudopimelodidae. Pp. 401-405. In: Reis, R. E., S. O. Kullander & C. J. Ferraris (Eds.). Checklist of the Freshwater Fishes of South and Central America. Porto Alegre, Edipucrs.
- Shibatta, O. A. 2003b. Phylogeny and classification of 'Pimelodidae'. Pp. 385-400. In: Arratia, G., B. G. Kapoor, M. Chardon & R. Diogo (Eds.). Catfishes. Science Publishers, Enfield.
- Shibatta, A. O. & R. C. Benine. 2005.A new species of Microglanis (Siluriformes: Pseudopimelodidae) from upper rio Parana basin, Brazil. Neotropical Ichthyology, 3: 579-585.
- Shibatta, O. A. 2007. Familia Pseudopimelodidae. Pp. 103-104. In: Buckup, P. A., N. A. Menezes & M. S. Ghazzi (Eds.). Catalogo das Especies de Peixes de Agua Doce do Brasil. Rio de Janeiro, Universidade Federal do Rio de Janeiro.
- Vallone, M. V. & J. M. Butler. 2004. AutoDimer: a screening tool for primer-dimer and hairpin structures. BioTechniques, 37: 226-231.
- Van Oosterhout, C., W. F. Hutchinson, D. P. M. Wills & P. F. Shipley. 2004. Micro-Checker: software for identifying and correcting genotyping errors in microsatellite data. Molecular Ecology Notes, 4: 535-538.
- Wagner, H. W. & K. M. Sefc. 1999. IDENTITY 1.0. Centre for Applied Genetics, University of Agricultural Sciences, Vienna. Available from http://www.boku.ac.at/zag/forsch/identity.htm. (18 March 2013)
- Weir, B. S. 1996. Genetic Data Analysis II. Sunderland, MA: Sinauer Associates, Inc.
- Zane, L., L. Bargelloni & T. Patarnello. 2002. Strategies for microsatellite isolation: A review. Molecular Ecology, 11: 1-16.