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Published June 28, 2024 | Version v2
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Linking selection to demography in experimental evolution of active death in a unicellular organism

  • 1. ROR icon Maladies Infectieuses et Vecteurs: Écologie, Génétique, Évolution et Contrôle
  • 2. ROR icon Centre d'Écologie Fonctionnelle et Évolutive

Description

This zenodo repository corresponds to the article "Linking selection to demography in experimental evolution of active death in a unicellular organism".

This study reports on our experimental explorations of eco-evolutionary dynamics in an puzzling context: active cell death leading to population decline in response to environmental stress.
We tracked the population dynamics of two closely related strains of the halotolerant microalga Dunaliella salina (they differ in whether or not they trigger programmed cell death), in competition over 13 cycles of salinity rise (about 180 generations).

This repositeroy contains:
'code' folder : the entire workflow with the Rmarkdown scripts of analysis, intermediate inputs and outputs.
'data_cyto' folder : the raw data of the cytometer counts.
'simulated_data_sets' folder : the 1000 simulated data sets.

Abstract

Deciphering how natural selection emerges from demographic differences among genotypes, and reciprocally how evolution affects population dynamics, is key to understanding population responses to environment stress, especially in non-trivial ecological scenarios. Many microbes can trigger programmed cell death (PCD) in response to stress, causing massive population decline followed by rapid rebound. To understand how selection may operate on this trait, we exposed monocultures and mixtures of two closely related strains of the microalga Dunalliela salina that do or do not induce PCD to multiple cycles of hyper-osmotic shock, and tracked demography and selection throughout. Population dynamics in mixtures and monocultures were largely consistent, suggesting that strong ecological interactions do not drive selection on PCD during the decline-rebound phase. Instead, long-term coexistence was largely explained by density-dependent competition near the stationary phase, regardless of the large frequency fluctuations at each cycle induced by the decline-rebound dynamics.

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Additional details

Related works

Continues
Journal article: 10.1086/724417 (DOI)

Dates

Submitted
2024-06-28