Profiling low-mRNA content cells in complex human tissues using BD Rhapsody single-cell analysis
Creators
-
1.
Innsbruck Medical University
- 2. Institute of Bioinformatics Innsbruck
Description
This archive contains all data files and code to reproduce the results from the paper:
"Profiling low-mRNA content cells in complex human tissues using BD Rhapsody single-cell analysis"
https://doi.org/10.1016/j.xpro.2024.103475
In particular, it contains the .h5ad output (e.g. prostate_raw.h5ad) files as received after the BD SevenBridges (SB) pipeline per individual tissue (for chosen thresholds for SB please check out the manuscript). Additionally, it also contains the notebooks (e.g. STAR_Notebook_Prostate.html) as a html file which uses the code provided in our paper. We further provide a more extensive version of the code as simple CLI tool. Feel free to check out our github repository for that (https://github.com/UKIM-5/STAR_scRNA_seq).
Files
Files
(350.3 MB)
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md5:d25418e8e2d1fd13660b178e83b50196
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Additional details
Related works
- Is part of
- 10.1186/s12943-022-01597-7 (DOI)
- 10.1016/j.ccell.2022.10.008 (DOI)
- 10.1038/s41467-023-37674-8 (DOI)
Dates
- Created
-
2024-06-19