Phased T2T 1KGP panel - code and performance data

This repository contains all code and resources required to reproduce the panels and figures published as part of "A T2T-CHM13 recombination map and globally diverse haplotype reference panel improves phasing and imputation".

phasing_T2T_data.tar.gz contains a series of parquet files that together contain all dataframes generated when evaluating this panel.

This panel is now hosted on AWS as part of the human pangenomics s3 drive at:
https://s3-us-west-2.amazonaws.com/human-pangenomics/index.html?prefix=T2T/CHM13/assemblies/variants/1000_Genomes_Project/chm13v2.0/Phased_SHAPEIT5_v1.1

The github repository containing more information about this panel is at https://github.com/JosephLalli/phasing_T2T.