Published March 14, 2018 | Version v1
Dataset Open

Simulation data for CHARMM36 POPC bilayer, 100 lipids/leaflet, 310K, GROMACS 5.1.4

Creators

Description

Simulations of a POPC bilayer without ions with CHARMM36 FF from the CHARMM-Gui. 

The first from the set of 6 simulations.

The goal was to study the effect of scaling the CHARMM FF on the ion binding.

 

Done for the NMRlipids project, see 
http://nmrlipids.blogspot.fi for more information.

A POPC bilayer consisting of 200 lipids (100 per leaflet) 
is simulated. The Charmm36 
model  is employed for lipids, the Charmm compatible variant 
of the tip3p model for water.

The Charmm36 force field parameters were obtained from http://charmm-gui.org/

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The files are in GROMACS format. Trajectory (.xtc) is 
380 ns long with data saved every 100 ps.

the initial structure (.gro), topology (.top), index file (.ndx), 
simulation paremeter file (.mdp), binary run input file 
for GROMACS v. 5.1–> (.tpr) and the energy output file 
(.edr) are provided. 

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