Published June 13, 2024
| Version v1
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ICS/IDS stitched file
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Description
Hi @ome team !
We usually use ICS/IDS file formats as an output to our stitching pipeline as the reading and writing is pretty fast. However, it seems that since Bio-Formats 7.x opening the files is not working anymore.
I tried with a Fiji with Bio-Formats 6.10.1 and the files open, but more recent versions give an issue.
java.lang.NullPointerException
at loci.formats.in.ICSReader.initFile(ICSReader.java:1481)
at loci.formats.FormatReader.setId(FormatReader.java:1480)
at loci.plugins.in.ImportProcess.initializeFile(ImportProcess.java:498)
at loci.plugins.in.ImportProcess.execute(ImportProcess.java:141)
at loci.plugins.in.Importer.showDialogs(Importer.java:156)
at loci.plugins.in.Importer.run(Importer.java:77)
at loci.plugins.LociImporter.run(LociImporter.java:78)
at ij.IJ.runUserPlugIn(IJ.java:244)
at ij.IJ.runPlugIn(IJ.java:210)
at ij.Executer.runCommand(Executer.java:152)
at ij.Executer.run(Executer.java:70)
at ij.IJ.run(IJ.java:326)
at ij.IJ.run(IJ.java:337)
at ij.macro.Functions.doRun(Functions.java:703)
at ij.macro.Functions.doFunction(Functions.java:99)
at ij.macro.Interpreter.doStatement(Interpreter.java:281)
at ij.macro.Interpreter.doStatements(Interpreter.java:267)
at ij.macro.Interpreter.run(Interpreter.java:163)
at ij.macro.Interpreter.run(Interpreter.java:93)
at ij.macro.MacroRunner.run(MacroRunner.java:146)
at java.lang.Thread.run(Thread.java:750)
You can find one example file at this link 1.
Thanks for your help !
Best,
Laurent
Files
Files
(1.3 GB)
Name | Size | Download all |
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md5:cae36e6d6155a3061a34ae873442900d
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477 Bytes | Download |
md5:34aff191ca38da1837c6ecba787bbd39
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1.3 GB | Download |
Additional details
Dates
- Issued
-
2024-06-13Posted on the forum