Published June 4, 2024
| Version v1
Dataset
Open
Control panel created from 30-40 Nanopore or PacBio HiFi sequencing data from the Human Pangenome Reference Consortium
Description
This is control panel for nanomonsv software, which is expected to exclude many false positives as well as improve computational cost. This is made by aligning 30-40 Nanopore or PacBio HiFi sequencing data from Human Pangenome Reference Consortium (HPRC) to the GRCh38 or CHM13 reference genomes with minimap2 version 2.24.
When you use these control panels and publish, do not forget to credit to HPRC!
Reference genomes:
- GRCh38: Download GRCh38
- CHM13: Download CHM13
Files
Files
(10.5 GB)
| Name | Size | Download all |
|---|---|---|
|
md5:8231a7afccece335bc92564f71fc92bb
|
2.2 GB | Download |
|
md5:faf9b97f1e3f1ba309d34cfb19d91ec1
|
1.9 GB | Download |
|
md5:dac0394692f072bb6f59a233a91c11d9
|
2.7 GB | Download |
|
md5:2b7d3ea3b524bc9e1824d449784e4f72
|
2.1 GB | Download |
|
md5:47ce50f30c872f10ce1be656b857fd06
|
870.4 MB | Download |
|
md5:9ed93d5414e1cea83ee8594c60631207
|
628.4 MB | Download |
Additional details
Related works
- Is supplemented by
- Journal: 10.1093/nar/gkad526 (DOI)
References
- Precise characterization of somatic complex structural variations from tumor/control paired long-read sequencing data with nanomonsv, Shiraishi et al., Nucleic Acids Research, 2023.