Published May 29, 2024
| Version v1.1
Dataset
Open
A comprehensive catalog of exact short tandem repeat regions on autosomes and sex chromosomes of the human genome GRCh38
Authors/Creators
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1.
German Center for Neurodegenerative Diseases
Description
To obtain a general TR catalog across the human genome, we identified genomic intervals with a stretch of exact repetitions of a DNA motif ranging from 1-6bp on GRCh38 autosomes and sex chromosomes by using STRfinder (v1.0), and each STR region was annotated based on gencode.V38 (https://www.gencodegenes.org/human/release_38.html). To end up, we successfully found 1,233,959 TR intervals, covering 0.783306% (24.2 Mbp) of GRCh38 (https://console.cloud.google.com/storage/browser/_details/genomics-public-data/resources/broad/hg38/v0/Homo_sapiens_assembly38.fasta).
Files
Files
(71.1 MB)
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md5:65080ebe46148a766d08a8dfbf42ee93
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6.0 MB | Download |
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md5:3bce9349969459b1e4f7f2cc77339177
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3.3 MB | Download |
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3.1 MB | Download |
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md5:63f1419a2799d8344876c096d432d8e7
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3.6 MB | Download |
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md5:789e9609a5a2b96788f72d146e647e00
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1.9 MB | Download |
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md5:940beb5afd7751d5a60dbef578ba82c9
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2.3 MB | Download |
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md5:05e83c6ed430974ae97b7de1dae3d00c
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2.3 MB | Download |
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md5:76fd9f6ae6963a6adbc3e1cb78bca4a8
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2.5 MB | Download |
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md5:7c1651cd2fabd9d3f790bf3cd8dfa4c6
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2.8 MB | Download |
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md5:676ee745d365cef5607a4c7d55eb6175
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1.6 MB | Download |
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md5:98bfc85dab1ef07fa6aa63f93173a5f7
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2.4 MB | Download |
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md5:eab64753484b76728db9340149a33f85
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5.6 MB | Download |
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md5:f8bfa11ea481b9997fa21dea9386a96a
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1.6 MB | Download |
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md5:43fec58ddd1a1e17d851e89909a55a46
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913.1 kB | Download |
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md5:c8ca187204790d9777bb6214e434ac50
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1.2 MB | Download |
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md5:233544b3cdcdb60df0d82e0aecc11db7
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4.5 MB | Download |
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md5:637a1a6ea15eefab26fc833101a2af0a
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4.0 MB | Download |
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md5:6a9e13e3ec0cc02562612b602b616808
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4.0 MB | Download |
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md5:a8f6290ead9236e8c03fd26cb89ae3d9
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3.8 MB | Download |
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md5:4196ad78dbdc1f44e620a046f243de3e
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3.9 MB | Download |
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md5:9d37674a07d52b2937912d8f3e936aeb
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3.3 MB | Download |
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md5:62040523ee6f144aface5e661f85bd65
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2.9 MB | Download |
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md5:5b5b5250882917a4bbcae52c9d127e32
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3.1 MB | Download |
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md5:06c776333a16e0cc5de8cbb5608e3cc9
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455.2 kB | Download |
Additional details
Dates
- Issued
-
2024-05-06