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Published May 14, 2024 | Version v1
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Nitrogen, a gasocrine signal, is sensed via gas-sensing gasoreceptor proteins such as Escherichia coli FNR protein

  • 1. Institute of Molecular Biology and Biotechnology, Faculty of Biology, Adam Mickiewicz University, Poznań, Poland.

Description

Understanding how organisms communicate is a fundamental question in biology and marks an evolutionarily important milestone. Organisms largely communicate via gas-based gasocrine, light-based photocrine, sound-based sonocrine, mineral/metal-based metallocrine, water-based aquacrine, and thermal radiation-based thermocrine signaling.1 Due to the importance of gasocrine signaling for biotic life, how organisms can sense gasocrine signals such as O2 (oxygen) via O2-sensing protein gasoreceptors (or sensors) has been largely investigated in microorganisms.2,3 Even though nitrogen (N2) is also one of the gasocrine signals, to the best of my knowledge and few other leading experts on nitrogen fixation and nitric oxide-dependent signaling, how organisms sense nitrogen per se is still unknown. I recently proposed that N2 is likely sensed indirectly via ammonia-sensing proteins (gasoreceptors).4 But there must be other proteins that can sense N2 per se. Just as the FeMo (iron-molybdenum) cofactor in nitrogenase can directly bind N2, other FeMo-binding proteins with signaling domains may function as N2-sensing proteins. Additionally, N2 can also bind to Fe-S (nonheme iron-sulfur) clusters.5 But then if N2 can bind to Fe-S clusters, this raises an important question on the interpretation of all the Fe-S-protein related experiments that were performed under N2-rich anerobic conditions in which N2 was not considered as the ligand but merely as an anerobic environment-inducing agent. For instance, the Escherichia coli Fe-S cluster-based dimeric transcription factor FNR (fumarate and nitrate reductase) can bind to specific DNA regions (FNR consensus motifs) under N2-rich anerobic condition but loses it dimerization state and DNA-binding ability under O2-rich condition.6–8  But FNR is only addressed as an ‘oxygen-sensing protein or oxygen sensor’ or as ‘global anaerobic transcription factor’ and not as a N2-sensing protein. If the anerobic-specific DNA-binding transcriptional activity via FNR dimerization state is due to either N2-interaction with FNR-bound Fe-S cluster or non-Fe-S salt bridge9, FNR is merely an N2 gas (solute)-sensing gasoreceptor protein. Orthologues of FNR or other N2-binding proteins with additional signaling domains are very likely putative N2-sensing gasoreceptor proteins. Systemically identifying N2- or other gas-sensing gasoreceptor proteins will help us understand gasocrine signaling and its role in civilizational diseases, antibiotic resistance, agricultural yields, causes for climate change and global warming. 

REFERENCES

1.         Anbalagan S. Why do the majority of drugs fail in clinical trials? My search for a moksha in biology [Internet]. 2024 [cited 2024 May 14]; Available from: https://zenodo.org/records/11079992

2.         Anbalagan S. Heme-based oxygen gasoreceptors. Am J Physiol Endocrinol Metab 2024; 326:E178–81.

3.         Anbalagan S. Oxygen is an essential gasotransmitter directly sensed via protein gasoreceptors. Animal Models and Experimental Medicine 2024; 7:189–93.

4.         Anbalagan S. Nitrogen, a gasocrine signal, is likely sensed via ammonia-sensing gasoreceptors [Internet]. 2024 [cited 2024 May 14]; Available from: https://zenodo.org/records/11180835

5.         Zambrano IC, Kowal AT, Mortenson LE, Adams MW, Johnson MK. Magnetic circular dichroism and electron paramagnetic resonance studies of hydrogenases I and II from Clostridium pasteurianum. J Biol Chem 1989; 264:20974–83.

6.         Lazazzera BA, Bates DM, Kiley PJ. The activity of the Escherichia coli transcription factor FNR is regulated by a change in oligomeric state. Genes Dev 1993; 7:1993–2005.

7.         Lazazzera BA, Beinert H, Khoroshilova N, Kennedy MC, Kiley PJ. DNA binding and dimerization of the Fe-S-containing FNR protein from Escherichia coli are regulated by oxygen. J Biol Chem 1996; 271:2762–8.

8.         Khoroshilova N, Popescu C, Münck E, Beinert H, Kiley PJ. Iron-sulfur cluster disassembly in the FNR protein of Escherichia coli by O2: [4Fe-4S] to [2Fe-2S] conversion with loss of biological activity. Proc Natl Acad Sci U S A 1997; 94:6087–92.

9.         Volbeda A, Darnault C, Renoux O, Nicolet Y, Fontecilla-Camps JC. The crystal structure of the global anaerobic transcriptional regulator FNR explains its extremely fine-tuned monomer-dimer equilibrium. Science Advances 2015; 1:e1501086.

 

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2024-05-14
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