Published May 15, 2024
| Version v1
Dataset
Open
Canadian Arctic killer whale genomic variants
Authors/Creators
-
1.
University of Manitoba
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2.
Fisheries and Oceans Canada
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3.
University of Oslo
- 4. Higdon Wildlife Consulting
- 5. Assiniboine Park Zoo
- 6. Greenland Institute of Natural Resources
- 7. Aarhus University
Description
This dataset contains resequencing data used in our killer whale genomics research exaiming population structure and demographic history, including unfiltered genomic variants and filtered SNPs. Source code for genomic analyses is available at github.com/edegreef/killerwhale-resequencing. Data uploaded here contain:
- orca_sample_info.csv - metadata for the killer whale samples
- orca_unfiltered_diploid.vcf.gz - all variant calls, including indels and SNPs (n = 29)
- orca_snps_q30_biallelic.vcf.gz - SNPs filtered for quality and bi-allelic sites (n = 29)
- orca_snps_q30_biallelic_HWE0.005_miss0.4.vcf.gz - SNPs filtered for quality, bi-allelic sites, out of HWE, and missingness > 0.4 (n = 29).
- orca_snps_q30_biallelic_HWE0.005_miss0.4_maf0.05_LDprunedr08_n24.vcf.gz - SNPs further filtered for MAF, LD-pruned, and removal of kin & duplicates (n = 24).
Files
orca_sample_info.csv
Files
(6.5 GB)
| Name | Size | Download all |
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md5:e6a1bb1b5cc37aa43fb50cf9f0255fc5
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3.1 kB | Preview Download |
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md5:0c638f4b717c864da2e004a8159bba6b
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624.9 MB | Download |
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md5:1a3165c0e6b6c666acdc3a1abe34a2be
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405.7 MB | Download |
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md5:90b534e883d17ee1cf7a13030060e843
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117.5 MB | Download |
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md5:a3eb60881922d23d9c2b20c655273be5
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5.3 GB | Download |
Additional details
Dates
- Accepted
-
2024-05-15