Published June 2025
| Version v9
Dataset
Open
Test data for CIBERER nextflow pipelines
Description
The test files used for the mosaicism-nextflow pipeline, owned by CIBERER pipelines, are processed files. The raw data originates from sample NA18278 from the GIAB project, accessible at https://www.internationalgenome.org/data-portal/search?q=NA12878.
The specific region selected for analysis is: 17:7577873-7580187.
The test dataset for CNV (test_set.tar.gz), generated in silico by VISOR (https://doi.org/10.1093/bioinformatics/btz719), consists of 8 combinations of 4 different haplotypes derived from chromosome 22 (GRCh38), at an average coverage of 30x.
A small test set for CNVs (CNV_test_set.tar.gz) consists on 10 samples from 1000 genomes project (hs37d5), each of them with a deletion in one exon of BRCA1.
Files
chr17_chrom_sizes.txt
Files
(661.4 MB)
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md5:b21ce62b3815e8c41fe26a1b87ccf294
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md5:4ab9a511f980bdbf012dfc6ed5ff1b69
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md5:05a87ebbf7809391dc77689f38361ed3
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md5:2513c407c4cae0c0551eb8163cb2fb1b
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md5:33bbd3eaeb2dfc4550def0e8ea4a5f2b
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md5:f4a4289d61578e35e28e9f3e2941f66f
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2.1 kB | Download |
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md5:e8d8f5fb9ff537348d94a704b29a26cb
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md5:defe9ebe7ec1b43a14630668a5c24d18
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md5:775272154a9a9224055d390cd46e0ee4
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md5:1646fcdb04cda0617c11bbabac84eaae
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md5:09644238907f4d70eb2ca63968603155
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md5:cf1c221841083aa36fc8829813a3b8ae
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521 Bytes | Download |
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md5:b63f60ed9ef53777be4164afb5f26ea2
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8.1 MB | Download |
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md5:a4f75f43545a9b64dd3bc65d74dfb9d8
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md5:4f13c555e8b1b4fcddac07b0c3478853
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116 Bytes | Download |
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md5:f9588051a77dc26411a1943495978368
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md5:e17053476ff8dddac18d3b07ba25ae29
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116 Bytes | Download |
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md5:3480956735adead8aa9bd7a03019e4cc
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550.2 MB | Download |
Additional details
Dates
- Created
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2024