Published May 7, 2024 | Version v1.0.1
Software Open

EPBD-BERT:Advancing Transcription Factor Binding Site Prediction Using DNA Breathing Dynamics and Sequence Transformers via Cross Attention

Creators

  • 1. George Mason University
  • 2. Los Alamos National Labs
  • 3. ROR icon Los Alamos National Laboratory
  • 4. Brown University

Contributors

Contact person:

Project manager:

Related person:

  • 1. ROR icon Los Alamos National Laboratory

Description

This framework aids in Transcription factor binding site prediction given DNA sequence information and DNA biophysical characteristics computed by pyDNA-EPBD. This framework utilizes a large language model for binding site prediction.

Files

lanl/EPBD-BERT-v1.0.1.zip

Files (3.8 MB)

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md5:c78f976a56c9f96531315e9a5ae2ced4
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Additional details

Related works

Is supplement to
Software: https://github.com/lanl/EPBD-BERT/tree/v1.0.1 (URL)