Published April 5, 2024 | Version v1.4.0
Software Open

NBISweden/AGAT: AGAT-v1.4.0

  • 1. IRD


  • fix #448 an issue affecting AGAT when using GFF2 and GFF2.5 bioperl parser. Bioperl is adding an extra empty ID attribute that mess up with AGAT. An extra step in AGAT remove this empty attribute and allows AGAT to works appropriately.
  • Rendering :
    • Re-activting progress bar (tata has been deactivated by mistake in previous releases)
    • Display AGAT header for all scripts (before was only for sp scripts)
    • Providing log information to user about the config file taken.
  • fix #441 use L3 feature instead to L1 as template to create features when transcript_id exists by @Juke34 in #442. Bug was affecting GTF input annotations that have only level3 features (CDS,exons;etc.) and that was outputted in GTF (GFF output are fine excepted their transcript_id attribute that become wrong but are anyway useless in GFF).
  • Fix #435 now output gene IDs by @Juke34 in #437
  • Fix #436 now appending Name,product,dbxref,product attributes by default instead of replacing. Add parameters to clean those attributes. by @Juke34 in #438


Files (25.4 MB)

Name Size Download all
25.4 MB Preview Download

Additional details

Related works