Published February 28, 2024
| Version v2
Dataset
Open
Statistical and power calculations animal trial persistant antimicrobials and resistance levels
Description
This repository is containing the datasets with statistical analysis of the paper: "Extended period of selection pressure due to persistancy of antimicrobials in broilers."
Power calculation
- Two CSV-files: Power calculation stdiff20 and Power calculation stdifauc
- One R-file: Power calculation antimicrobial persistent residues
The phenotypic resistance
- R-file: Phenotypic resistance analysis trial, CSV-file: E. coli resistance per treatment
The resistome analysis
- one CSV-files: Resistome workfile
- one R-file: Resistome statistical analysis
Microbiome analysis
- Phyloseq object
- R-file: Rarfied phyloseq object from biom file, CSV-file: metedata, biom-file: reads_trail
- Alpha- and beta-diversity analysis
- R-file: Beta en alpha diversity animal trail, Rdata-file: rarefy.animaltrial
- Microbial abundance analysis
- R-file: relative abundance animal trial, Rdata-file: rarefy.animaltrial
Files
E. coli resistance per treatment.csv
Files
(12.4 MB)
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