Published June 5, 2024
| Version v2
Dataset
Open
2021_2022_E4_EBIRD_30spp_SEASONAL_BirdDistribution_WMV_hosts
- 1. Environmental Research Group Oxford
Description
Abstract
A series of weekly bird abundance distribution datasets is now available from EBIRD (https://science.ebird.org/en/status-and-trends). ERGO has processed these data in several tranches to provide weekly species richness and weekly aggregated abundance indices at 3km resolution. Data for thirty species have now been processed. These species have been selected as being West Nile Virus hosts, using literature search, inference from mosquito WNV vector blood meals and from bird serology reports. The two tranches are a) all 30 selected species and b) the top 15 E4Warning priority species . Details are provided in the accompanying Excel Spreadsheet (e4ebird readmeJune24.xls).
Description
This dataset has been requested for 'the Horizon e4Warning project on mapping and modelling West Nile Virus Disease and its Hosts' then been downloaded from ebird.org and it includes weekly abundance geospatial tifs for 30 species:
- weekly presence
- weekly species richness
- week abundance sum
Data obtained from Ebird https://science.ebird.org/en/status-and-trends/species/
Species Names:
| Species | English Name | filname code |
| Alcedo atthis | Common Kingfisher | comkin1 |
| Anas platyrhynchos | Mallard | mallar3 |
| Anser anser | Graylag Gose | gragoo |
| Athene noctua | Little Owl | litowl1 |
| Bulbulcus ibis | Cattle Egret | categr |
| Buteo buteo | Common Buzzard | combuz1 |
| Columba palumbus | Commin Wood Piegon | cowpig |
| Corvus cornix | Hooded Crow | hoocro1 |
| Corvus corone cornix | Carrion Crow | carcro1 |
| Corvus monedula | Eurasian Jackdaw | eurjac |
| Cyanistes caeruleus | Blue Tit | blutit |
| Egretta garzetta | (Little Egret) | litegr |
| Eremophila alpestris | Horned Lark | horlar |
| Falco tinnunculus | Eurasian Kestrel | eurkes |
| Garrulus glandarius | Eurasian Jay | eurjay1 |
| Hirundo rustica | Barn Swallow | barswa |
| Larus argentatus | Herring Gull | hergul |
| Lulua arborea | Woodlark | woolar1 |
| Luscinia Luscinia | Thrush Nightinglae | thrnig1 |
| Luscinia megarhynchos | Common nightingale | comnig1 |
| Passer domesticus (including Passer italiae and Passer hispaniolensis) | House Sparrow | houspa |
| Pica pica | Eurasian Magpie | eurmag1 |
| Streptopelia decaocto | Eurasian Collared Dove | eucdov |
| Turdus merula | Eurasian Blackbird | eurbla |
| Ciconia ciconia | White Stork | whisto1 |
| Sturnus vulgaris | European Starling | eursta |
| Sylvia atricapilla | Eurasian Bl;ackcap | blackc1 |
| Acrocephalus scirpaceus | Common Reed Warbler | eurwar1 |
| Fulica atra | Eurasian Coot | eurcoo |
| Columba livia | Rock Pigeon | rocpig |
| Gallus gallus | Domestic chicken |
File Names:
a) e4ebirdabundanceall30weeklyJune24 All weekly abundance datasets for 30 availablke spp at 3km resolution, June 24
b) e4ebirdPAall30weeklyJune24 Presence absence with missing recoded to 0 for all 30 species available in June 24. This recoding is based of ad hoc checks of weekly datasets against the birdlife species ranges, which suggest that the maximum extents of combined weekly abundance distributions match the rage boundares fairly well
c) e4ebirdspprichnessall23SUMMEANweeklyFeb24 Summed and mean weekly presence absence for 23 available species calc Feb24. If a species in missing a weekly dataset, missing weeks are filled with last valid presence week up to halfway through the gap in availability, then with the first available distribution after the gap
d) e4ebirdspprichnesse415SUMMEANweeklyJun24 Summed and mean weekly presence absence for e4 15 priority species calc June 24. If a species in missing a weekly dataset, missing weeks are filled with last valid presence week up to halfway through the gap in availability, then with the first available distribution after the gap
e) e4ebirdspprichnessall30SUMMEANweeklyJun24 Summed and mean weekly presence absence for 30 available species calc June 24. If a species in missing a weekly dataset, missing weeks are filled with last valid presence week up to halfway through the gap in availability, then with the first available distribution after the gap
f) e4ebirdabundanceall30summeanweekJun24 Summed and mean weekly median abundance for 30 available species calc June 24. If a species in missing a weekly dataset, missing weeks are filled with last valid presence week up to halfway through the gap in availability, then with the first available distribution after the gap
g) e4ebirdeabundance415summeanweekJun24 Summed and mean weekly median abundance for e4 15 priority species calc June 24. If a species in missing a weekly dataset, missing weeks are filled with last valid presence week up to halfway through the gap in availability, then with the first available distribution after the gap
Files
e4ebirdabundanceall30summeanweekJun24.zip
Files
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Additional details
Related works
- Is version of
- Dataset: 10.5281/zenodo.11083232 (DOI)
Funding
- UK Research and Innovation
- E4WARNING: ECO-EPIDEMIOLOGICAL INTELLIGENCE FOR EARLY WARNING AND RESPONSE TO MOSQUITO-BORNE DISEASE RISK IN ENDEMIC AND EMERGENCE SETTINGS 10066422
- European Commission
- E4Warning - Eco-Epidemiological Intelligence for early Warning and response to mosquito-borne disease risk in Endemic and Emergence settings 101086640
Dates
- Available
-
2021/2022Time Series