Data and code for the study "Palliocystidium, a new genus in the family Hydnodontaceae (Trechisporales)"
Authors/Creators
- 1. Department of Ecology, FB10 Mathematics and Natural Sciences, University of Kassel, Heinrich-Plett-Strasse 40, 34132 Kassel, Germany
- 2. Office National des Forêts (ONF), 5 avenue Mirandol, 48000 Mende, France
Description
This is a collection of data used in our study "Palliocystidium, a new genus in the family Hydnodontaceae (Trechisporales)".
Background and aims – During fieldwork in French Guiana in 2018, two fungal specimens resembling the outstanding member of the genus Subulicystidium, viz. S. oberwinkleri, were collected. This study aims to clarify species- and genus-level assignment of this material from French Guiana and S. oberwinkleri.
Material and methods – Corticioid fruiting bodies and spore prints were examined and measured under a light microscope. DNA sequences of the two nuclear ribosomal regions were used for Maximum likelihood and Bayesian phylogenetic analyses: (i) large subunit-coding DNA and (ii) internal transcribed spacer. Furthermore, guanine-cytosine content of the DNA region was calculated for (i), and UNITE Species Hypotheses Matching Analysis was performed for newly generated sequences of (ii).
R code (as R Markdown files), input data and results of analyses (tables, tree files and publication-ready figures) are organized as R project.
To reproduce analyses, unpack the archive, navigate to the root directory, launch the R project via opening .Rproj file. as well as R markdown files for particular analysis steps.
Notes
Files
Files
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md5:889ef2551d9ec67a1d0f6fc871f8a1fd
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Additional details
Dates
- Updated
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2024-04-23