v0.3.0

Features:

• metrics on each contig are now calculated and output to a file (by default, transrate_contigs.csv)
• output files can have a custom prefix with the --outfile argument

Improvements:

• all inline C methods replaced with extension C (cleaner code, only compiles once on install)
• linguistic complexity now calculated in C (400x speedup)
• support new CRB-BLAST feature that splits BLAST query into one chunk per core (faster than threaded BLAST in most cases)
• check dependencies at every run and give instructions for installing them if missing

Bug fixes:

• remove redundant express dependency
• fix parsing of samtools mpileup output so contig names are now matched up
• fix bug where null characters in contigs weren't handled (wtf are null characters doing in contigs, Trinity?)
• handle all bases that aren't ACTG by considering them to be Ns