Published April 8, 2024
| Version v1
Dataset
Open
UCSC Toil RNA-Seq Recompute - TCGA TARGET GTEX recompute
Creators
- Vivian, John
- Rao, Arjun Arkal
- Nothaft, Frank Austin
- Ketchum, Christopher
- Armstrong, Joel
- Novak, Adam
- Pfeil, Jacob
- Narkizian, Jake
- Deran, Alden D.
- Musselman-Brown, Audrey
- Schmidt, Hannes
- Amstutz, Peter
- Craft, Brian
- Goldman, Mary
- Rosenbloom, Kate
- Cline, Melissa
- O'Connor, Brian
- Hanna, Megan
- Birger, Chet
- Kent, W. James
- Patterson, David A.
- Joseph, Anthony D.
- Zhu, Jingchun
- Zaranek, Sasha
- Getz, Gad
- Haussler, David
- Paten, Benedict
Description
This is a re-upload for long-term-storage of the TCGA, TARGET GTEX recompute by the UCSC Toil consortium found in Xenabrowser.
Original files may be found on Xenabrowser here. The original publication can be found at the following DOI: https://doi.org/10.1038/nbt.3772
Respectively, direct download URLs for these two files are:
- `expression_matrix.tsv.gz`: https://toil-xena-hub.s3.us-east-1.amazonaws.com/download/TcgaTargetGtex_gene_expected_count.gz
- `expression_matrix_metadata.txt.gz`: https://toil-xena-hub.s3.us-east-1.amazonaws.com/download/TcgaTargetGTEX_phenotype.txt.gz
Permission for re-upload was asked and obtained from the consortium.
Files
Files
(1.3 GB)
| Name | Size | Download all |
|---|---|---|
|
md5:87b9b2c409846b412396836faedf4814
|
1.3 GB | Download |
|
md5:25cc6f2bdbc56da2989df79a2ad86308
|
135.8 kB | Download |
Additional details
Related works
- Is published in
- Publication: 10.1038/nbt.3772 (DOI)
Dates
- Accepted
-
2017-04-11Publication date of Nature paper
References
- Vivian, J., Rao, A., Nothaft, F. et al. Toil enables reproducible, open source, big biomedical data analyses. Nat Biotechnol 35, 314–316 (2017). https://doi.org/10.1038/nbt.3772