TRGT-0.4.0 and TRGT-denovo-0.1.0

Supporting material for: A phenome-wide association study of methylated GC-rich repeats identifies a GCC repeat expansion in AFF3 as a significant cause of intellectual disability (https://www.medrxiv.org/content/10.1101/2023.05.03.23289461v2)

The source code of TRGT-0.4.0 (https://github.com/PacificBiosciences/trgt) and TRGT-denovo-0.1.0 (https://github.com/PacificBiosciences/trgt-denovo) used for tandem repeat genotyping and de novo calling in PacBio HiFi sequencing data.