Tara Pacific - A pan-ecosystemic approach to the -omics complexity of coral reef holobionts across the Pacific Ocean
Published March 18, 2024 | Version v2
Dataset Restricted

rDNA 18S V9 ASV tables (SWARM) for Tara Pacific Expedition

Creators

  • 1. PHIM, Univ Montpellier, CIRAD, INRAE, Institut Agro, IRD, Montpellier, France
  • 2. CNRS, Sorbonne Université, FR2424, ABiMS, Station Biologique de Roscoff, Roscoff, 29680 France
  • 3. Research Federation for the Study of Global Ocean Systems Ecology and Evolution, FR2022/Tara Oceans GOSEE, 3 rue Michel-Ange, Paris, 75016 France
  • 4. Sorbonne Université, CNRS, Station Biologique de Roscoff, AD2M, UMR 7144, ECOMAP, Roscoff, France
  • 5. Génomique Métabolique, Génoscope, Institut François Jacob, CEA, CNRS, Univ Evry, Université Paris-Saclay, Evry, France
  • 6. School of Marine Sciences, University of Maine, USA
  • 7. Department of Biology, Institute of Microbiology and Swiss Institute of Bioinformatics, ETH Zürich, Zürich, Switzerland
  • 8. Department of Biology, University of Konstanz, 78457 Konstanz, Germany
  • 9. PSL Research University: EPHE-UPVD-CNRS, USR 3278 CRIOBE, Laboratoire d'Excellence CORAIL, Université de Perpignan, 52 Avenue Paul Alduy, 66860 Perpignan Cedex, France
  • 10. Sorbonne Université, CNRS, Laboratoire d'Ecogéochimie des Environnements Benthiques (LECOB), Observatoire Océanologique de Banyuls, 66650 Banyuls sur mer, France
  • 11. European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK
  • 12. Sorbonne Université, Institut de la Mer de Villefranche sur mer, Laboratoire d'Océanographie de Villefranche, F-06230 Villefranche-sur-Mer, France
  • 13. Weizmann Institute of Science, Department of Earth and Planetary Sciences, 76100 Rehovot, Israel
  • 14. Oregon State University, Department of Microbiology, Oregon USA
  • 15. University of South Florida, Tampa, FL, USA
  • 16. Fondation Tara Océan, Base Tara, 8 rue de Prague, 75012 Paris, France
  • 17. Shimoda Marine Research Center, University of Tsukuba, 5-10-1, Shimoda, Shizuoka, Japan
  • 18. PSL Research University: EPHE-UPVD-CNRS, USR 3278 CRIOBE, Université de Perpignan, France
  • 19. School of Marine Sciences, University of Maine, Orono, 04469, Maine, USA
  • 20. Institut de Biologie de l'Ecole Normale Supérieure (IBENS), Ecole normale supérieure, CNRS, INSERM, Université PSL, 75005 Paris, France
  • 21. Laboratoire des Sciences du Climat et de l'Environnement, LSCE/IPSL, CEA-CNRS-UVSQ, Université Paris-Saclay, F-91191 Gif-sur-Yvette, France
  • 22. Université Côte d'Azur, CNRS, INSERM, IRCAN, Medical School, Nice, France and Department of Medical Genetics, CHU of Nice, France
  • 23. Université Côte d'Azur, CNRS, Inserm, IRCAN, France
  • 24. Centre Scientifique de Monaco, 8 Quai Antoine Ier, MC-98000, Principality of Monaco
  • 25. The Ohio State University, Departments of Microbiology and Civil, Environmental and Geodetic Engineering, Columbus, Ohio, 43210 USA
  • 26. Marine Biodiscovery Laboratory, School of Chemistry and Ryan Institute, National University of Ireland, Galway, Ireland

Description

This data is the result of the second analysis of the V9 18S rDNA metabarcoding sequencing data from the Tara Pacific expedition. The analysis was conducted using cutadapt, vsearch, swarm and lulu. Please refer to the readme file for more details.

Notes

Special thanks to the Tara Ocean Foundation, the R/V Tara crew and the Tara Pacific Expedition Participants (https://doi.org/10.5281/zenodo.3777760). We are keen to thank the commitment of the following institutions for their financial and scientific support that made this unique Tara Pacific Expedition possible: CNRS, PSL, CSM, EPHE, Genoscope, CEA, Inserm, Université Côte d'Azur, ANR, agnès b., UNESCO-IOC, the Veolia Foundation, the Prince Albert II de Monaco Foundation, Région Bretagne, Billerudkorsnas, AmerisourceBergen Company, Lorient Agglomération, Oceans by Disney, L'Oréal, Biotherm, France Collectivités, Fonds Français pour l'Environnement Mondial (FFEM), Etienne Bourgois, and the Tara Ocean Foundation teams. Tara Pacific would not exist without the continuous support of the participating institutes. The authors also particularly thank Serge Planes, Denis Allemand, and the Tara Pacific consortium.

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