Published March 4, 2024 | Version v1
Poster Open

The Information Infrastructure for BioImage Data (I3D:bio) project to advance FAIR microscopy data management for the community

  • 1. ROR icon German Cancer Research Center
  • 2. ROR icon Heinrich Heine University Düsseldorf
  • 3. ROR icon Osnabrück University
  • 4. ROR icon University of Freiburg
  • 5. ROR icon German BioImaging – Gesellschaft für Mikroskopie und Bildanalyse

Description

Research data management (RDM) in microscopy and image analysis is a challenging task. Large files in proprietary formats, complex N-dimensional array structures, and various metadata models and formats can make image data handling inconvenient and difficult. For data organization, annotation, and sharing, researchers need solutions that fit everyday practice and comply with the FAIR (Findable, Accessible, Interoperable, Reusable) principles. International community-based efforts have begun creating open data models (OME), an open file format and translation library (OME-TIFF, Bio-Formats), data management software platforms, and microscopy metadata recommendations and annotation tools. Bringing these developments into practice requires support and training. Iterative feedback and tool improvement is needed to foster practical adoption by the scientific community. The Information Infrastructure for BioImage Data (I3D:bio) project works on guidelines, training resources, and practical assistance for FAIR microscopy RDM adoption with a focus on the management platform OMERO and metadata annotations.

Notes (English)

Funded by Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) - 462231789
Supported by German BioImaging - Gesellschaft für Mikroskopie und Bildanalyse (GerBI-GMB)

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